Open science resources for the discovery and analysis of Tara Oceans data
Pesant, Stéphane ... et. al.-- 16 pages, 5 figures, 2 tables.-- This article is contribution number 26 of the Tara Oceans Consortium
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Pesant, Stéphane ... et. al.-- 16 pages, 5 figures, 2 tables.-- This article is contribution number 26 of the Tara Oceans Consortium |
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Research Foundation - Flanders |
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Research Foundation - Flanders Pesant, Stéphane Acinas, Silvia G. Tara Oceans Consortium |
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Pesant, Stéphane Acinas, Silvia G. Tara Oceans Consortium |
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Pesant, Stéphane Acinas, Silvia G. Tara Oceans Consortium Open science resources for the discovery and analysis of Tara Oceans data |
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Pesant, Stéphane |
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Open science resources for the discovery and analysis of Tara Oceans data |
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Open science resources for the discovery and analysis of Tara Oceans data |
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Open science resources for the discovery and analysis of Tara Oceans data |
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Open science resources for the discovery and analysis of Tara Oceans data |
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Open science resources for the discovery and analysis of Tara Oceans data |
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open science resources for the discovery and analysis of tara oceans data |
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Nature Publishing Group |
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http://hdl.handle.net/10261/127237 http://dx.doi.org/10.13039/501100002954 http://dx.doi.org/10.13039/501100001665 http://dx.doi.org/10.13039/501100000781 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100001691 http://dx.doi.org/10.13039/501100004794 http://dx.doi.org/10.13039/501100011560 http://dx.doi.org/10.13039/100010905 http://dx.doi.org/10.13039/100013060 http://dx.doi.org/10.13039/501100003130 http://dx.doi.org/10.13039/501100011697 http://dx.doi.org/10.13039/501100010685 |
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dig-icm-es-10261-1272372021-12-27T16:15:29Z Open science resources for the discovery and analysis of Tara Oceans data Pesant, Stéphane Acinas, Silvia G. Tara Oceans Consortium Research Foundation - Flanders Stazione Zoologica Anton Dohrn Università degli Studi di Milano-Bicocca Agence Nationale de la Recherche (France) European Research Council Ministerio de Ciencia e Innovación (España) Japan Society for the Promotion of Science Veolia Foundation Région Bretagne World Courier Illumina Lorient Agglomération Fondation EDF Fondation Prince Albert II de Monaco Centre National de Séquençage (France) European Molecular Biology Laboratory Centre National de la Recherche Scientifique (France) Pesant, Stéphane ... et. al.-- 16 pages, 5 figures, 2 tables.-- This article is contribution number 26 of the Tara Oceans Consortium The Tara Oceans expedition (2009–2013) sampled contrasting ecosystems of the world oceans, collecting environmental data and plankton, from viruses to metazoans, for later analysis using modern sequencing and state-of-the-art imaging technologies. It surveyed 210 ecosystems in 20 biogeographic provinces, collecting over 35,000 samples of seawater and plankton. The interpretation of such an extensive collection of samples in their ecological context requires means to explore, assess and access raw and validated data sets. To address this challenge, the Tara Oceans Consortium offers open science resources, including the use of open access archives for nucleotides (ENA) and for environmental, biogeochemical, taxonomic and morphological data (PANGAEA), and the development of on line discovery tools and collaborative annotation tools for sequences and images. Here, we present an overview of Tara Oceans Data, and we provide detailed registries (data sets) of all campaigns (from port-to-port), stations and sampling events We thank the commitment of the following people and sponsors who made this singular expedition possible: CNRS (in particular the Groupement de Recherche GDR3280), European Molecular Biology Laboratory (EMBL), Genoscope/CEA, Fund for Scientific Research—Flanders, VIB, Stazione Zoologica Anton Dohrn, UNIMIB, ANR (projects POSEIDON/ANR-09-BLAN-0348, BIOMARKS/ANR-08-BDVA- 003, PROMETHEUS/ANR-09-GENM-031, PROMETHEUS/ANR-09-PCS-GENM-217, TARAGIRUS/ANR-09-PCS-GENM-218, OCEANOMICS/ANR-11-BTBR-0008, FRANCE GENOMIQUE/ANR-10-INBS-09-08), EU FP7 (MicroB3/No.287589, IHMS/HEALTH-F4-2010-261376, MetaCardis/HEALTH-F4-2012-305312), ERC Advanced Grant Awards to CB (Diatomite: 294823) and PB (CancerBiome: 268985), Spanish Ministry of Science and Innovation grant CGL2011-26848/BOS MicroOcean PANGENOMICS to SGA, JSPS KAKENHI Grant Number 26430184 to HO, FWO, BIO5, Biosphere 2, agne`s b., the Veolia Environment Foundation, Region Bretagne, World Courier, Illumina, Cap L’Orient, the EDF Foundation EDF Diversiterre, FRB, the Prince Albert II de Monaco Foundation, Etienne Bourgois, the Tara schooner and its captain and crew. Tara Oceans would not exist without continuous support from 23 institutes (http://oceans.taraexpeditions.org) Peer Reviewed 2015-05-26 2015-12-30T08:29:06Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1038/sdata.2015.23 e-issn: 2052-4463 Scientific Data 2: 150023 (2015) http://hdl.handle.net/10261/127237 10.1038/sdata.2015.23 http://dx.doi.org/10.13039/501100002954 http://dx.doi.org/10.13039/501100001665 http://dx.doi.org/10.13039/501100000781 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100001691 http://dx.doi.org/10.13039/501100004794 http://dx.doi.org/10.13039/501100011560 http://dx.doi.org/10.13039/100010905 http://dx.doi.org/10.13039/100013060 http://dx.doi.org/10.13039/501100003130 http://dx.doi.org/10.13039/501100011697 http://dx.doi.org/10.13039/501100010685 26029378 #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/FP7/287589 info:eu-repo/grantAgreement/EC/FP7/261376 info:eu-repo/grantAgreement/EC/FP7/305312 info:eu-repo/grantAgreement/EC/FP7/294823 info:eu-repo/grantAgreement/EC/FP7/268985 Publisher's version https://doi.org/10.1038/sdata.2015.23 Sí open Nature Publishing Group |