Predictability of the community-function landscape in wine yeast ecosystems

Ruiz, Javier; de Celis, Miguel; Díaz-Colunga, Juan; Vila, Jean; Benitez-Dominguez, Belén; Vicente, Javier; Santos, Antonio; Sánchez, Álvaro; Belda, Ignacio; Agencia Estatal de Investigación (España)

Predictability of the community-function landscape in wine yeast ecosystems

14 p.-4 fig.

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Bibliographic Details
Main Authors:	Ruiz, Javier, de Celis, Miguel, Díaz-Colunga, Juan, Vila, Jean, Benitez-Dominguez, Belén, Vicente, Javier, Santos, Antonio, Sánchez, Álvaro, Belda, Ignacio
Other Authors:	Agencia Estatal de Investigación (España)
Format:	artículo biblioteca
Language:	English
Published:	EMBO Press 2023-08-07
Subjects:	Community-function landscape, Functional effect equations, Microbial interactions, Phylogenetic signaL, Wine yeasts,
Online Access:	http://hdl.handle.net/10261/333309 http://dx.doi.org/10.13039/501100011033
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spelling	dig-ica-es-10261-3333092024-05-06T10:33:07Z Predictability of the community-function landscape in wine yeast ecosystems Ruiz, Javier de Celis, Miguel Díaz-Colunga, Juan Vila, Jean Benitez-Dominguez, Belén Vicente, Javier Santos, Antonio Sánchez, Álvaro Belda, Ignacio Agencia Estatal de Investigación (España) Ruiz, Javier [0000-0002-7657-3329] de Celis, Miguel [0000-0002-3653-3031] Díaz-Colunga, Juan [0000-0001-8995-4529] Vila, Jean [0000-0003-0499-0200] Benitez-Dominguez, Belén [0009-0005-2209-9739] Sánchez, Álvaro [0000-0002-2292-5608] Belda, Ignacio [0000-0002-2607-5049] Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts 14 p.-4 fig. Predictively linking taxonomic composition and quantitative ecosystem functions is a major aspiration in microbial ecology, which must be resolved if we wish to engineer microbial consortia. Here, we have addressed this open question for an ecological function of major biotechnological relevance: alcoholic fermentation in wine yeast communities. By exhaustively phenotyping an extensive collection of naturally occurring wine yeast strains, we find that most ecologically and industrially relevant traits exhibit phylogenetic signal, allowing functional traits in wine yeast communities to be predicted from taxonomy. Furthermore, we demonstrate that the quantitative contributions of individual wine yeast strains to the function of complex communities followed simple quantitative rules. These regularities can be integrated to quantitatively predict the function of newly assembled consortia. Besides addressing theoretical questions in functional ecology, our results and methodologies can provide a blueprint for rationally managing microbial processes of biotechnological relevance. This work has been supported by grant PID2019-105834GA-I00 (acronym Wineteractions) funded by the Spanish State Research Agency/Science and Research Ministry (10.13039/501100011033). Javier Ruiz acknowledges the Spanish State Research Agency/Science and Research Ministry for hispostdoctoral contract Juan de la Cierva-formación 2021 (FJC2021-046516-I).Alvaro Sanchez was Funded/Co-Funded by the European Union (ERC,ECOPROSPECTOR-101088469). Peer reviewed 2023-08-16T11:05:08Z 2023-08-16T11:05:08Z 2023-08-07 artículo http://purl.org/coar/resource_type/c_6501 Molecular Systems Biology e11613 (2023) http://hdl.handle.net/10261/333309 10.15252/msb.202311613 1744-4292 http://dx.doi.org/10.13039/501100011033 en #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2017-2020/PID2019-105834GA-I00/ES/ECOLOGIA FUNCIONAL Y BIOLOGIA DE SISTEMAS PARA LA MODELIZACION DEL PROCESO DE FERMENTACION VINICA/ Publisher's version The underlying dataset has been published as supplementary material of the article in the publisher platform at https://doi.org/10.15252/msb.202311613 https://doi.org/10.15252/msb.202311613 Sí open application/pdf EMBO Press
institution	ICA ES
collection	DSpace
country	España
countrycode	ES
component	Bibliográfico
access	En linea
databasecode	dig-ica-es
tag	biblioteca
region	Europa del Sur
libraryname	Biblioteca del ICA España
language	English
topic	Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts
spellingShingle	Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts Ruiz, Javier de Celis, Miguel Díaz-Colunga, Juan Vila, Jean Benitez-Dominguez, Belén Vicente, Javier Santos, Antonio Sánchez, Álvaro Belda, Ignacio Predictability of the community-function landscape in wine yeast ecosystems
description	14 p.-4 fig.
author2	Agencia Estatal de Investigación (España)
author_facet	Agencia Estatal de Investigación (España) Ruiz, Javier de Celis, Miguel Díaz-Colunga, Juan Vila, Jean Benitez-Dominguez, Belén Vicente, Javier Santos, Antonio Sánchez, Álvaro Belda, Ignacio
format	artículo
topic_facet	Community-function landscape Functional effect equations Microbial interactions Phylogenetic signaL Wine yeasts
author	Ruiz, Javier de Celis, Miguel Díaz-Colunga, Juan Vila, Jean Benitez-Dominguez, Belén Vicente, Javier Santos, Antonio Sánchez, Álvaro Belda, Ignacio
author_sort	Ruiz, Javier
title	Predictability of the community-function landscape in wine yeast ecosystems
title_short	Predictability of the community-function landscape in wine yeast ecosystems
title_full	Predictability of the community-function landscape in wine yeast ecosystems
title_fullStr	Predictability of the community-function landscape in wine yeast ecosystems
title_full_unstemmed	Predictability of the community-function landscape in wine yeast ecosystems
title_sort	predictability of the community-function landscape in wine yeast ecosystems
publisher	EMBO Press
publishDate	2023-08-07
url	http://hdl.handle.net/10261/333309 http://dx.doi.org/10.13039/501100011033
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Predictability of the community-function landscape in wine yeast ecosystems

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