Phylogenomic analyses provide insights into primate evolution
Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution.
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American Association for the Advancement of Science
2023-06-01
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dig-ibe-es-10261-3485882024-02-28T15:08:06Z Phylogenomic analyses provide insights into primate evolution Shao, Yong Zhou, Long Li, Fang Zhao, Lan Zhang, Bao-Lin Shao, Feng Chen, Jia-Wei Chen, Chun-Yan Bi, Xupeng Zhuang, Xiao-Lin Zhu, Hong-Liang Hu, Jiang Sun, Zongyi Li, Xin Wang, Depeng Rivas-González, Iker Wang, Sheng Wang, Yun-Mei Chen, Wu Li, Gang Lu, Hui-Meng Liu, Yang Kuderna, Lukas F. K. Farh, Kyle Kai-How Fan, Peng-Fei Yu, Li Li, Ming Liu, Zhi-Jin Tiley, George P. Yoder, Anne D. Roos, Christian Hayakawa, Takashi Marqués-Bonet, Tomàs Rogers, Jeffrey Stenson, Peter D. Cooper, David N. Schierup, Mikkel Heide Yao, Yong-Gang Zhang, Ya-Ping Wang, Wen Qi, Xiao-Guang Zhang, Guojie Wu, Dong-Dong Chinese Academy of Sciences National Natural Science Foundation of China Villum Fonden Japan Society for the Promotion of Science Hokkaido University European Research Council European Commission Ministerio de Economía y Competitividad (España) Agencia Estatal de Investigación (España) Generalitat de Catalunya Kuderna, Lukas F. K. [0000-0002-9992-9295] Marqués-Bonet, Tomàs [0000-0002-5597-3075] Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution. This work was supported by the Strategic Priority Research Program of the Chinese Academy of Sciences (grants XDPB17 and XDB31020000); the National Natural Science Foundation of China (grants 31822048 and 32270500); the CAS Light of West China Program (grant xbzg-zdsys-202213); the Yunnan Fundamental Research Project (grant 2019FI010); the Animal Branch of the Germplasm Bank of Wild Species of Chinese Academy of Science (Large Research Infrastructure Funding); the International Partnership Program of Chinese Academy of Sciences (grant 152453KYSB20170002); a Villum Investigator Grant (25900 to G.Z.); the Japan Society for the Promotion of Science (JSPS KAKENHI grants 16K18630, 19K16241, 20H04987, 21H04919, and 21KK0106); Hokkaido University Sousei Tokutei Research; and JSPS Bilateral Joint Research Project (JPJSBP grant 120219902 to T.H.). T.M.B. was supported by funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (grant 864203), PID2021-126004NB-100 (MICIIN/FEDER, UE), and Secretaria d’Universitats i Recerca and CERCA Programme del Departament d’Economia i Coneixement de la Generalitat de Catalunya (GRC 2021 SGR 00177). Peer reviewed 2024-02-28T07:57:05Z 2024-02-28T07:57:05Z 2023-06-01 artículo Science 380(6648): 913-924 (2023) 0036-8075 http://hdl.handle.net/10261/348588 10.1126/science.abn6919 1095-9203 en #PLACEHOLDER_PARENT_METADATA_VALUE# #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/864203 info:eu-repo/grantAgreement/AEI/Plan Estatal de Investigación Científica y Técnica y de Innovación 2021-2023/PID2021-126004NB-I00/ES/LA INTERACCION ENTRE LA EPIGENOMICA Y LA DIVERGENCIA GENOMICA EN LA EVOLUCION RECIENTE DE PRIMATES Y MAMIFEROS/ https://doi.org/10.1126/science.abn6919 Sí none American Association for the Advancement of Science |
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Comparative analysis of primate genomes within a phylogenetic context is essential for understanding the evolution of human genetic architecture and primate diversity. We present such a study of 50 primate species spanning 38 genera and 14 families, including 27 genomes first reported here, with many from previously less well represented groups, the New World monkeys and the Strepsirrhini. Our analyses reveal heterogeneous rates of genomic rearrangement and gene evolution across primate lineages. Thousands of genes under positive selection in different lineages play roles in the nervous, skeletal, and digestive systems and may have contributed to primate innovations and adaptations. Our study reveals that many key genomic innovations occurred in the Simiiformes ancestral node and may have had an impact on the adaptive radiation of the Simiiformes and human evolution. |
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Chinese Academy of Sciences |
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Chinese Academy of Sciences Shao, Yong Zhou, Long Li, Fang Zhao, Lan Zhang, Bao-Lin Shao, Feng Chen, Jia-Wei Chen, Chun-Yan Bi, Xupeng Zhuang, Xiao-Lin Zhu, Hong-Liang Hu, Jiang Sun, Zongyi Li, Xin Wang, Depeng Rivas-González, Iker Wang, Sheng Wang, Yun-Mei Chen, Wu Li, Gang Lu, Hui-Meng Liu, Yang Kuderna, Lukas F. K. Farh, Kyle Kai-How Fan, Peng-Fei Yu, Li Li, Ming Liu, Zhi-Jin Tiley, George P. Yoder, Anne D. Roos, Christian Hayakawa, Takashi Marqués-Bonet, Tomàs Rogers, Jeffrey Stenson, Peter D. Cooper, David N. Schierup, Mikkel Heide Yao, Yong-Gang Zhang, Ya-Ping Wang, Wen Qi, Xiao-Guang Zhang, Guojie Wu, Dong-Dong |
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artículo |
author |
Shao, Yong Zhou, Long Li, Fang Zhao, Lan Zhang, Bao-Lin Shao, Feng Chen, Jia-Wei Chen, Chun-Yan Bi, Xupeng Zhuang, Xiao-Lin Zhu, Hong-Liang Hu, Jiang Sun, Zongyi Li, Xin Wang, Depeng Rivas-González, Iker Wang, Sheng Wang, Yun-Mei Chen, Wu Li, Gang Lu, Hui-Meng Liu, Yang Kuderna, Lukas F. K. Farh, Kyle Kai-How Fan, Peng-Fei Yu, Li Li, Ming Liu, Zhi-Jin Tiley, George P. Yoder, Anne D. Roos, Christian Hayakawa, Takashi Marqués-Bonet, Tomàs Rogers, Jeffrey Stenson, Peter D. Cooper, David N. Schierup, Mikkel Heide Yao, Yong-Gang Zhang, Ya-Ping Wang, Wen Qi, Xiao-Guang Zhang, Guojie Wu, Dong-Dong |
spellingShingle |
Shao, Yong Zhou, Long Li, Fang Zhao, Lan Zhang, Bao-Lin Shao, Feng Chen, Jia-Wei Chen, Chun-Yan Bi, Xupeng Zhuang, Xiao-Lin Zhu, Hong-Liang Hu, Jiang Sun, Zongyi Li, Xin Wang, Depeng Rivas-González, Iker Wang, Sheng Wang, Yun-Mei Chen, Wu Li, Gang Lu, Hui-Meng Liu, Yang Kuderna, Lukas F. K. Farh, Kyle Kai-How Fan, Peng-Fei Yu, Li Li, Ming Liu, Zhi-Jin Tiley, George P. Yoder, Anne D. Roos, Christian Hayakawa, Takashi Marqués-Bonet, Tomàs Rogers, Jeffrey Stenson, Peter D. Cooper, David N. Schierup, Mikkel Heide Yao, Yong-Gang Zhang, Ya-Ping Wang, Wen Qi, Xiao-Guang Zhang, Guojie Wu, Dong-Dong Phylogenomic analyses provide insights into primate evolution |
author_sort |
Shao, Yong |
title |
Phylogenomic analyses provide insights into primate evolution |
title_short |
Phylogenomic analyses provide insights into primate evolution |
title_full |
Phylogenomic analyses provide insights into primate evolution |
title_fullStr |
Phylogenomic analyses provide insights into primate evolution |
title_full_unstemmed |
Phylogenomic analyses provide insights into primate evolution |
title_sort |
phylogenomic analyses provide insights into primate evolution |
publisher |
American Association for the Advancement of Science |
publishDate |
2023-06-01 |
url |
http://hdl.handle.net/10261/348588 |
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