Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum

Penicillium digitatum and Penicillium expansum are plant pathogenic fungi that cause the green and blue mold diseases, respectively, leading to serious postharvest economic losses worldwide. Moreover, P. expansum can produce mycotoxins, which are hazardous compounds to human and animal health. The development of tools that allow multiple and precise genetic manipulation of these species is crucial for the functional characterization of their genes. In this sense, CRISPR/Cas9 represents an excellent opportunity for genome editing due to its efficiency, accuracy and versatility. In this study, we developed protoplast generation and transformation protocols and applied them to implement the CRISPR/Cas9 technology in both species for the first time. For this, we used a self-replicative, recyclable AMA1-based plasmid which allows unlimited number of genomic modifications without the limitation of integrative selection markers. As test case, we successfully targeted the wetA gene, which encodes a regulator of conidiophore development. Finally, CRISPR/Cas9-derived ΔwetA strains were analyzed. Mutants showed reduced axenic growth, differential pathogenicity and altered conidiogenesis and germination. Additionally, P. digitatum and P. expansum ΔwetA mutants showed distinct sensitivity to fungal antifungal proteins (AFPs), which are small, cationic, cysteine-rich proteins that have become interesting antifungals to be applied in agriculture, medicine and in the food industry. With this work, we demonstrate the feasibility of the CRISPR/Cas9 system, expanding the repertoire of genetic engineering tools available for these two important postharvest pathogens and open up the possibility to adapt them to other economically relevant phytopathogenic fungi, for which toolkits for genetic modifications are often limited.

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Main Authors: Garrigues, Sandra, Manzanares, Paloma, Marcos López, José Francisco
Other Authors: Generalitat Valenciana
Format: artículo biblioteca
Language:English
Published: Springer Nature 2022-03-17
Subjects:AMA1-based plasmid; CRISPR/Cas9, Genome editing, Penicillium digitatum, Penicillium expansum, wetA,
Online Access:http://hdl.handle.net/10261/266376
http://dx.doi.org/10.13039/501100003359
https://api.elsevier.com/content/abstract/scopus_id/85126446419
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spelling dig-iata-es-10261-2663762024-05-22T20:35:55Z Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum Garrigues, Sandra Manzanares, Paloma Marcos López, José Francisco Generalitat Valenciana 0000-0002-4104-6246 AMA1-based plasmid; CRISPR/Cas9 Genome editing Penicillium digitatum Penicillium expansum wetA Penicillium digitatum and Penicillium expansum are plant pathogenic fungi that cause the green and blue mold diseases, respectively, leading to serious postharvest economic losses worldwide. Moreover, P. expansum can produce mycotoxins, which are hazardous compounds to human and animal health. The development of tools that allow multiple and precise genetic manipulation of these species is crucial for the functional characterization of their genes. In this sense, CRISPR/Cas9 represents an excellent opportunity for genome editing due to its efficiency, accuracy and versatility. In this study, we developed protoplast generation and transformation protocols and applied them to implement the CRISPR/Cas9 technology in both species for the first time. For this, we used a self-replicative, recyclable AMA1-based plasmid which allows unlimited number of genomic modifications without the limitation of integrative selection markers. As test case, we successfully targeted the wetA gene, which encodes a regulator of conidiophore development. Finally, CRISPR/Cas9-derived ΔwetA strains were analyzed. Mutants showed reduced axenic growth, differential pathogenicity and altered conidiogenesis and germination. Additionally, P. digitatum and P. expansum ΔwetA mutants showed distinct sensitivity to fungal antifungal proteins (AFPs), which are small, cationic, cysteine-rich proteins that have become interesting antifungals to be applied in agriculture, medicine and in the food industry. With this work, we demonstrate the feasibility of the CRISPR/Cas9 system, expanding the repertoire of genetic engineering tools available for these two important postharvest pathogens and open up the possibility to adapt them to other economically relevant phytopathogenic fungi, for which toolkits for genetic modifications are often limited. This work was supported by PROMETEO/2018/066 from ‘Conselleria d’Educació’ (Generalitat Valenciana, Comunitat Valenciana, Spain). SG holds a ‘Juan de la Cierva Incorporación’ grant (IJC2020-042749-I) from the Spanish ‘Ministerio de Ciencia e Innovación’, funded by The European Union–NextGenerationEU. Peer reviewed 2022-04-06T05:44:18Z 2022-04-06T05:44:18Z 2022-03-17 artículo http://purl.org/coar/resource_type/c_6501 Current Genetics 68: 515-529 (2022) 0172-8083 http://hdl.handle.net/10261/266376 10.1007/s00294-022-01236-0 http://dx.doi.org/10.13039/501100003359 35298666 2-s2.0-85126446419 https://api.elsevier.com/content/abstract/scopus_id/85126446419 en Current genetics Postprint https://doi.org/10.1007/s00294-022-01236-0 Sí open Springer Nature
institution IATA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-iata-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IATA España
language English
topic AMA1-based plasmid; CRISPR/Cas9
Genome editing
Penicillium digitatum
Penicillium expansum
wetA
AMA1-based plasmid; CRISPR/Cas9
Genome editing
Penicillium digitatum
Penicillium expansum
wetA
spellingShingle AMA1-based plasmid; CRISPR/Cas9
Genome editing
Penicillium digitatum
Penicillium expansum
wetA
AMA1-based plasmid; CRISPR/Cas9
Genome editing
Penicillium digitatum
Penicillium expansum
wetA
Garrigues, Sandra
Manzanares, Paloma
Marcos López, José Francisco
Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
description Penicillium digitatum and Penicillium expansum are plant pathogenic fungi that cause the green and blue mold diseases, respectively, leading to serious postharvest economic losses worldwide. Moreover, P. expansum can produce mycotoxins, which are hazardous compounds to human and animal health. The development of tools that allow multiple and precise genetic manipulation of these species is crucial for the functional characterization of their genes. In this sense, CRISPR/Cas9 represents an excellent opportunity for genome editing due to its efficiency, accuracy and versatility. In this study, we developed protoplast generation and transformation protocols and applied them to implement the CRISPR/Cas9 technology in both species for the first time. For this, we used a self-replicative, recyclable AMA1-based plasmid which allows unlimited number of genomic modifications without the limitation of integrative selection markers. As test case, we successfully targeted the wetA gene, which encodes a regulator of conidiophore development. Finally, CRISPR/Cas9-derived ΔwetA strains were analyzed. Mutants showed reduced axenic growth, differential pathogenicity and altered conidiogenesis and germination. Additionally, P. digitatum and P. expansum ΔwetA mutants showed distinct sensitivity to fungal antifungal proteins (AFPs), which are small, cationic, cysteine-rich proteins that have become interesting antifungals to be applied in agriculture, medicine and in the food industry. With this work, we demonstrate the feasibility of the CRISPR/Cas9 system, expanding the repertoire of genetic engineering tools available for these two important postharvest pathogens and open up the possibility to adapt them to other economically relevant phytopathogenic fungi, for which toolkits for genetic modifications are often limited.
author2 Generalitat Valenciana
author_facet Generalitat Valenciana
Garrigues, Sandra
Manzanares, Paloma
Marcos López, José Francisco
format artículo
topic_facet AMA1-based plasmid; CRISPR/Cas9
Genome editing
Penicillium digitatum
Penicillium expansum
wetA
author Garrigues, Sandra
Manzanares, Paloma
Marcos López, José Francisco
author_sort Garrigues, Sandra
title Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
title_short Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
title_full Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
title_fullStr Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
title_full_unstemmed Application of recyclable CRISPR/Cas9 tools for targeted genome editing in the postharvest pathogenic fungi Penicillium digitatum and Penicillium expansum
title_sort application of recyclable crispr/cas9 tools for targeted genome editing in the postharvest pathogenic fungi penicillium digitatum and penicillium expansum
publisher Springer Nature
publishDate 2022-03-17
url http://hdl.handle.net/10261/266376
http://dx.doi.org/10.13039/501100003359
https://api.elsevier.com/content/abstract/scopus_id/85126446419
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