Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology

During nematode surveys in southern Spain and Italy 14 populations of Xiphinema species tentatively identified as Xiphinema americanum-group were detected. Morphological and morphometrical studies identified three new species and six known Xiphinema americanum-group species, viz.: Xiphinema parabrevicolle n. sp., Xiphinema parapachydermum n. sp., Xiphinema paratenuicutis n. sp., Xiphinema duriense, Xiphinema incertum, Xiphinema opisthohysterum, Xiphinema pachtaicum, Xiphinema rivesi, and Xiphinema santos. The Xiphinema americanum-group is the most difficult Xiphinema species group for diagnosis since the morphology is very conservative and morphometric characters often overlap. This group includes vectors of several important plant pathogenic viruses that cause significant damage to a wide range of agricultural crops. Molecular characterisation of these species using D2-D3 expansion regions of 28S rRNA, 18S rRNA, ITS1-rRNA and the protein-coding mitochondrial gene, cytochrome oxidase c subunit 1 was carried out and maximum likelihood and Bayesian inference analysis were used to reconstruct phylogenetic relationships among these species and with other Xiphinema americanum-group species. © 2012 KNPV.

Saved in:
Bibliographic Details
Main Authors: Gutiérrez-Gutiérrez, Carlos, Cantalapiedra-Navarrete, C., Decraemer, W. A., Vovlas, Nicola, Prior, Tom, Palomares Rius, Juan E., Castillo, Pablo
Other Authors: Ministerio de Ciencia e Innovación (España)
Format: artículo biblioteca
Language:English
Published: Springer 2012-11
Subjects:Cryptic species, New geographic record, rDNA, Maximum likelihood, Virus vector, Bayesian inference, Cytochrome c oxidase subunit 1, Dagger nematodes,
Online Access:http://hdl.handle.net/10261/90360
http://dx.doi.org/10.13039/501100004837
http://dx.doi.org/10.13039/501100000780
http://dx.doi.org/10.13039/501100011011
Tags: Add Tag
No Tags, Be the first to tag this record!
id dig-ias-es-10261-90360
record_format koha
spelling dig-ias-es-10261-903602018-08-01T10:05:03Z Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology Gutiérrez-Gutiérrez, Carlos Cantalapiedra-Navarrete, C. Decraemer, W. A. Vovlas, Nicola Prior, Tom Palomares Rius, Juan E. Castillo, Pablo Ministerio de Ciencia e Innovación (España) Junta de Andalucía European Commission Cryptic species New geographic record rDNA Maximum likelihood Virus vector Bayesian inference Cytochrome c oxidase subunit 1 Dagger nematodes During nematode surveys in southern Spain and Italy 14 populations of Xiphinema species tentatively identified as Xiphinema americanum-group were detected. Morphological and morphometrical studies identified three new species and six known Xiphinema americanum-group species, viz.: Xiphinema parabrevicolle n. sp., Xiphinema parapachydermum n. sp., Xiphinema paratenuicutis n. sp., Xiphinema duriense, Xiphinema incertum, Xiphinema opisthohysterum, Xiphinema pachtaicum, Xiphinema rivesi, and Xiphinema santos. The Xiphinema americanum-group is the most difficult Xiphinema species group for diagnosis since the morphology is very conservative and morphometric characters often overlap. This group includes vectors of several important plant pathogenic viruses that cause significant damage to a wide range of agricultural crops. Molecular characterisation of these species using D2-D3 expansion regions of 28S rRNA, 18S rRNA, ITS1-rRNA and the protein-coding mitochondrial gene, cytochrome oxidase c subunit 1 was carried out and maximum likelihood and Bayesian inference analysis were used to reconstruct phylogenetic relationships among these species and with other Xiphinema americanum-group species. © 2012 KNPV. This research was supported by grant AGL2009-06955 from ‘Ministerio de Ciencia e Innovación’ of Spain, grant AGR-136 from ‘Consejería de Economía, Innvovación y Ciencia’ from Junta de Andalucía, and the European Social Fund. Peer Reviewed 2014-02-04T08:52:11Z 2014-02-04T08:52:11Z 2012-11 2014-02-04T08:52:11Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1007/s10658-012-0039-9 issn: 0929-1873 e-issn: 1573-8469 European Journal of Plant Pathology 134(3): 561-597 (2012) http://hdl.handle.net/10261/90360 10.1007/s10658-012-0039-9 http://dx.doi.org/10.13039/501100004837 http://dx.doi.org/10.13039/501100000780 http://dx.doi.org/10.13039/501100011011 en Postprint http://dx.doi.org/10.1007/s10658-012-0039-9 Sí open Springer
institution IAS ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-ias-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IAS España
language English
topic Cryptic species
New geographic record
rDNA
Maximum likelihood
Virus vector
Bayesian inference
Cytochrome c oxidase subunit 1
Dagger nematodes
Cryptic species
New geographic record
rDNA
Maximum likelihood
Virus vector
Bayesian inference
Cytochrome c oxidase subunit 1
Dagger nematodes
spellingShingle Cryptic species
New geographic record
rDNA
Maximum likelihood
Virus vector
Bayesian inference
Cytochrome c oxidase subunit 1
Dagger nematodes
Cryptic species
New geographic record
rDNA
Maximum likelihood
Virus vector
Bayesian inference
Cytochrome c oxidase subunit 1
Dagger nematodes
Gutiérrez-Gutiérrez, Carlos
Cantalapiedra-Navarrete, C.
Decraemer, W. A.
Vovlas, Nicola
Prior, Tom
Palomares Rius, Juan E.
Castillo, Pablo
Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
description During nematode surveys in southern Spain and Italy 14 populations of Xiphinema species tentatively identified as Xiphinema americanum-group were detected. Morphological and morphometrical studies identified three new species and six known Xiphinema americanum-group species, viz.: Xiphinema parabrevicolle n. sp., Xiphinema parapachydermum n. sp., Xiphinema paratenuicutis n. sp., Xiphinema duriense, Xiphinema incertum, Xiphinema opisthohysterum, Xiphinema pachtaicum, Xiphinema rivesi, and Xiphinema santos. The Xiphinema americanum-group is the most difficult Xiphinema species group for diagnosis since the morphology is very conservative and morphometric characters often overlap. This group includes vectors of several important plant pathogenic viruses that cause significant damage to a wide range of agricultural crops. Molecular characterisation of these species using D2-D3 expansion regions of 28S rRNA, 18S rRNA, ITS1-rRNA and the protein-coding mitochondrial gene, cytochrome oxidase c subunit 1 was carried out and maximum likelihood and Bayesian inference analysis were used to reconstruct phylogenetic relationships among these species and with other Xiphinema americanum-group species. © 2012 KNPV.
author2 Ministerio de Ciencia e Innovación (España)
author_facet Ministerio de Ciencia e Innovación (España)
Gutiérrez-Gutiérrez, Carlos
Cantalapiedra-Navarrete, C.
Decraemer, W. A.
Vovlas, Nicola
Prior, Tom
Palomares Rius, Juan E.
Castillo, Pablo
format artículo
topic_facet Cryptic species
New geographic record
rDNA
Maximum likelihood
Virus vector
Bayesian inference
Cytochrome c oxidase subunit 1
Dagger nematodes
author Gutiérrez-Gutiérrez, Carlos
Cantalapiedra-Navarrete, C.
Decraemer, W. A.
Vovlas, Nicola
Prior, Tom
Palomares Rius, Juan E.
Castillo, Pablo
author_sort Gutiérrez-Gutiérrez, Carlos
title Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
title_short Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
title_full Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
title_fullStr Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
title_full_unstemmed Phylogeny, diversity, and species delimitation in some species of the Xiphinema americanum-group complex (Nematoda: Longidoridae), as inferred from nuclear and mitochondrial DNA sequences and morphology
title_sort phylogeny, diversity, and species delimitation in some species of the xiphinema americanum-group complex (nematoda: longidoridae), as inferred from nuclear and mitochondrial dna sequences and morphology
publisher Springer
publishDate 2012-11
url http://hdl.handle.net/10261/90360
http://dx.doi.org/10.13039/501100004837
http://dx.doi.org/10.13039/501100000780
http://dx.doi.org/10.13039/501100011011
work_keys_str_mv AT gutierrezgutierrezcarlos phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT cantalapiedranavarretec phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT decraemerwa phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT vovlasnicola phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT priortom phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT palomaresriusjuane phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
AT castillopablo phylogenydiversityandspeciesdelimitationinsomespeciesofthexiphinemaamericanumgroupcomplexnematodalongidoridaeasinferredfromnuclearandmitochondrialdnasequencesandmorphology
_version_ 1777663005543104512