Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1

Cytoplasmic male sterility (CMS) is a valuable trait for hybrid seed production. The msH1 CMS system in common wheat results from the incompatibility between the nuclear genome of wheat and the cytoplasm of the wild barley Hordeum chilense. This work aims to identify H. chilense candidate genes for fertility restoration in the msH1 system with a multidisciplinary strategy based on chromosome engineering, differential expression analysis and genome mapping. Alloplasmic isogenic wheat lines differing for fertility, associated with the presence of an acrocentric chromosome Hchac resulting from the rearrangement of the short arms of H. chilense chromosomes 1Hch and 6Hch, were used for transcriptome sequencing. Two novel RNA-seq mapping approaches were designed and compared to identify differentially expressed genes of H. chilense associated with male fertility restoration. Minichromosomes (Hchmi), new smaller reorganizations of the Hchac also restoring fertility, were obtained and used to validate the candidate genes. This strategy was successful identifying a putative restorer-of-fertility region on 6HchS, with six candidate genes, including the ortholog of the barley restorer gene Rfm1. Additionally, transcriptomics gave preliminary insights on sterility and restoration networks showing the importance of energy supply, stress, protein metabolism and RNA processing.

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Main Authors: Rodríguez-Suárez, Cristina, Bagnaresi, Paolo, Cattivelli, Luigi, Pistón, Fernando, Castillo, Almudena, Martín Ramírez, Azahara Carmen, Atienza, Sergio G., Ramírez, M. Carmen, Martín, Antonio
Other Authors: Ministerio de Economía y Competitividad (España)
Format: artículo biblioteca
Language:English
Published: Springer Nature 2019-10-17
Subjects:Cytoplasmic male sterility, Common wheat, Hordeum chilense, Minichromosomes, Restorer-of-fertility, RNA-seq,
Online Access:http://hdl.handle.net/10261/205472
http://dx.doi.org/10.13039/501100003329
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spelling dig-ias-es-10261-2054722020-10-17T04:30:37Z Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1 Rodríguez-Suárez, Cristina Bagnaresi, Paolo Cattivelli, Luigi Pistón, Fernando Castillo, Almudena Martín Ramírez, Azahara Carmen Atienza, Sergio G. Ramírez, M. Carmen Martín, Antonio Ministerio de Economía y Competitividad (España) Cytoplasmic male sterility Common wheat Hordeum chilense Minichromosomes Restorer-of-fertility RNA-seq Cytoplasmic male sterility (CMS) is a valuable trait for hybrid seed production. The msH1 CMS system in common wheat results from the incompatibility between the nuclear genome of wheat and the cytoplasm of the wild barley Hordeum chilense. This work aims to identify H. chilense candidate genes for fertility restoration in the msH1 system with a multidisciplinary strategy based on chromosome engineering, differential expression analysis and genome mapping. Alloplasmic isogenic wheat lines differing for fertility, associated with the presence of an acrocentric chromosome Hchac resulting from the rearrangement of the short arms of H. chilense chromosomes 1Hch and 6Hch, were used for transcriptome sequencing. Two novel RNA-seq mapping approaches were designed and compared to identify differentially expressed genes of H. chilense associated with male fertility restoration. Minichromosomes (Hchmi), new smaller reorganizations of the Hchac also restoring fertility, were obtained and used to validate the candidate genes. This strategy was successful identifying a putative restorer-of-fertility region on 6HchS, with six candidate genes, including the ortholog of the barley restorer gene Rfm1. Additionally, transcriptomics gave preliminary insights on sterility and restoration networks showing the importance of energy supply, stress, protein metabolism and RNA processing. This research was funded by Grants AGL2013-43329-R and SOLAUT_00025062, from Ministerio de Economía y Competitividad, Spain (MINECO). Peer reviewed 2020-03-27T10:40:00Z 2020-03-27T10:40:00Z 2019-10-17 artículo http://purl.org/coar/resource_type/c_6501 TAG Theoretical and Applied Genetics 133: 283-295 (2020) 0040-5752 http://hdl.handle.net/10261/205472 10.1007/s00122-019-03457-3 1432-2242 http://dx.doi.org/10.13039/501100003329 en #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/MINECO/Plan Estatal de Investigación Científica y Técnica y de Innovación 2013-2016/AGL2013-43329-R Postprint http://dx.doi.org/10.1007/s00122-019-03457-3 Sí open Springer Nature
institution IAS ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-ias-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IAS España
language English
topic Cytoplasmic male sterility
Common wheat
Hordeum chilense
Minichromosomes
Restorer-of-fertility
RNA-seq
Cytoplasmic male sterility
Common wheat
Hordeum chilense
Minichromosomes
Restorer-of-fertility
RNA-seq
spellingShingle Cytoplasmic male sterility
Common wheat
Hordeum chilense
Minichromosomes
Restorer-of-fertility
RNA-seq
Cytoplasmic male sterility
Common wheat
Hordeum chilense
Minichromosomes
Restorer-of-fertility
RNA-seq
Rodríguez-Suárez, Cristina
Bagnaresi, Paolo
Cattivelli, Luigi
Pistón, Fernando
Castillo, Almudena
Martín Ramírez, Azahara Carmen
Atienza, Sergio G.
Ramírez, M. Carmen
Martín, Antonio
Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
description Cytoplasmic male sterility (CMS) is a valuable trait for hybrid seed production. The msH1 CMS system in common wheat results from the incompatibility between the nuclear genome of wheat and the cytoplasm of the wild barley Hordeum chilense. This work aims to identify H. chilense candidate genes for fertility restoration in the msH1 system with a multidisciplinary strategy based on chromosome engineering, differential expression analysis and genome mapping. Alloplasmic isogenic wheat lines differing for fertility, associated with the presence of an acrocentric chromosome Hchac resulting from the rearrangement of the short arms of H. chilense chromosomes 1Hch and 6Hch, were used for transcriptome sequencing. Two novel RNA-seq mapping approaches were designed and compared to identify differentially expressed genes of H. chilense associated with male fertility restoration. Minichromosomes (Hchmi), new smaller reorganizations of the Hchac also restoring fertility, were obtained and used to validate the candidate genes. This strategy was successful identifying a putative restorer-of-fertility region on 6HchS, with six candidate genes, including the ortholog of the barley restorer gene Rfm1. Additionally, transcriptomics gave preliminary insights on sterility and restoration networks showing the importance of energy supply, stress, protein metabolism and RNA processing.
author2 Ministerio de Economía y Competitividad (España)
author_facet Ministerio de Economía y Competitividad (España)
Rodríguez-Suárez, Cristina
Bagnaresi, Paolo
Cattivelli, Luigi
Pistón, Fernando
Castillo, Almudena
Martín Ramírez, Azahara Carmen
Atienza, Sergio G.
Ramírez, M. Carmen
Martín, Antonio
format artículo
topic_facet Cytoplasmic male sterility
Common wheat
Hordeum chilense
Minichromosomes
Restorer-of-fertility
RNA-seq
author Rodríguez-Suárez, Cristina
Bagnaresi, Paolo
Cattivelli, Luigi
Pistón, Fernando
Castillo, Almudena
Martín Ramírez, Azahara Carmen
Atienza, Sergio G.
Ramírez, M. Carmen
Martín, Antonio
author_sort Rodríguez-Suárez, Cristina
title Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
title_short Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
title_full Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
title_fullStr Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
title_full_unstemmed Transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the CMS wheat system msH1
title_sort transcriptomics, chromosome engineering and mapping identify a restorer-of-fertility region in the cms wheat system msh1
publisher Springer Nature
publishDate 2019-10-17
url http://hdl.handle.net/10261/205472
http://dx.doi.org/10.13039/501100003329
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