Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific
According to the FAO/WHO Codex Alimentarius regional standards for kava (Piper methysticum Forst. f.), only Noble cultivars shall be used as raw material. Other P. methysticum cultivars and wild forms (P. m. var. wichmannii C.DC.) are excluded from trade. There is a need for accurate identification tools as morpho-agronomic descriptors are influenced by growing conditions and once kava roots have been harvested, it is visually impossible to differentiate Noble cultivars from others. In the present study, 163 leaf samples originating from Papua New Guinea, the Solomon Islands, Vanuatu, Fiji, Tahiti, Hawaii and Pohnpei were analyzed using 13 microsatellite (Single Sequence Repeat, SSR) markers. Hierarchical Clustering Analysis (HCA) and Multiple Correspondence Analysis (MCA) clearly differentiated five groups: Nobles from Polynesia, Nobles from Vanuatu, Two-day cultivars from Vanuatu, var. wichmannii from Vanuatu and P. methysticum cultivars for Papua New Guinea. Fourier Transform InfraRed (FTIR) was used to assess its potential as a high throughput analytical tool to detect nobility. FTIR spectra (1800-800 cm−1) from 138 root powder samples were analyzed using Principal Component Analysis (PCA). Nobles from Vanuatu and from Polynesia were not differentiated from each other but were differentiated from poor quality P. methysticum cultivars and from var. wichmannii. Linear Discriminant Analysis (LDA) improved the differentiation of Nobles from others. Samples were then classified in two groups: Nobles (Vanuatu + Polynesia) and non-Nobles. A learning and a test sets were composed at random. PLS-DA (Partial Least Square Discriminant Analysis) allowed the differentiation of Nobles with a prediction accuracy over 96.9%. FTIR has potential for kava quality control. The method described here is simple, fast, eco-friendly, and requires less than 0.5 g of root powder. Its routine application could greatly contribute to guarantee kava quality and protect the international markets.
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dig-cirad-fr-6096782024-06-19T07:30:03Z http://agritrop.cirad.fr/609678/ http://agritrop.cirad.fr/609678/ Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific. Lebot Vincent, Labouisse Jean-Pierre, Rivallan Ronan, Kaoh Juliane, Davrieux Fabrice. 2024. Food Control, 164:110598, 11 p.https://doi.org/10.1016/j.foodcont.2024.110598 <https://doi.org/10.1016/j.foodcont.2024.110598> Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific Lebot, Vincent Labouisse, Jean-Pierre Rivallan, Ronan Kaoh, Juliane Davrieux, Fabrice eng 2024 Food Control Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 Papouasie-Nouvelle-Guinée Vanuatu France Hawaï Fidji Polynésie française Guinée http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 According to the FAO/WHO Codex Alimentarius regional standards for kava (Piper methysticum Forst. f.), only Noble cultivars shall be used as raw material. Other P. methysticum cultivars and wild forms (P. m. var. wichmannii C.DC.) are excluded from trade. There is a need for accurate identification tools as morpho-agronomic descriptors are influenced by growing conditions and once kava roots have been harvested, it is visually impossible to differentiate Noble cultivars from others. In the present study, 163 leaf samples originating from Papua New Guinea, the Solomon Islands, Vanuatu, Fiji, Tahiti, Hawaii and Pohnpei were analyzed using 13 microsatellite (Single Sequence Repeat, SSR) markers. Hierarchical Clustering Analysis (HCA) and Multiple Correspondence Analysis (MCA) clearly differentiated five groups: Nobles from Polynesia, Nobles from Vanuatu, Two-day cultivars from Vanuatu, var. wichmannii from Vanuatu and P. methysticum cultivars for Papua New Guinea. Fourier Transform InfraRed (FTIR) was used to assess its potential as a high throughput analytical tool to detect nobility. FTIR spectra (1800-800 cm−1) from 138 root powder samples were analyzed using Principal Component Analysis (PCA). Nobles from Vanuatu and from Polynesia were not differentiated from each other but were differentiated from poor quality P. methysticum cultivars and from var. wichmannii. Linear Discriminant Analysis (LDA) improved the differentiation of Nobles from others. Samples were then classified in two groups: Nobles (Vanuatu + Polynesia) and non-Nobles. A learning and a test sets were composed at random. PLS-DA (Partial Least Square Discriminant Analysis) allowed the differentiation of Nobles with a prediction accuracy over 96.9%. FTIR has potential for kava quality control. The method described here is simple, fast, eco-friendly, and requires less than 0.5 g of root powder. Its routine application could greatly contribute to guarantee kava quality and protect the international markets. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/609678/1/Use%20of%20SSR%20markers%20and%20FTIR%20chemometrics%20to%20assess%20the%20nobility%20of%20kava_Food%20Control_2024.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1016/j.foodcont.2024.110598 10.1016/j.foodcont.2024.110598 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.foodcont.2024.110598 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1016/j.foodcont.2024.110598 |
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Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 |
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Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 Lebot, Vincent Labouisse, Jean-Pierre Rivallan, Ronan Kaoh, Juliane Davrieux, Fabrice Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
description |
According to the FAO/WHO Codex Alimentarius regional standards for kava (Piper methysticum Forst. f.), only Noble cultivars shall be used as raw material. Other P. methysticum cultivars and wild forms (P. m. var. wichmannii C.DC.) are excluded from trade. There is a need for accurate identification tools as morpho-agronomic descriptors are influenced by growing conditions and once kava roots have been harvested, it is visually impossible to differentiate Noble cultivars from others. In the present study, 163 leaf samples originating from Papua New Guinea, the Solomon Islands, Vanuatu, Fiji, Tahiti, Hawaii and Pohnpei were analyzed using 13 microsatellite (Single Sequence Repeat, SSR) markers. Hierarchical Clustering Analysis (HCA) and Multiple Correspondence Analysis (MCA) clearly differentiated five groups: Nobles from Polynesia, Nobles from Vanuatu, Two-day cultivars from Vanuatu, var. wichmannii from Vanuatu and P. methysticum cultivars for Papua New Guinea. Fourier Transform InfraRed (FTIR) was used to assess its potential as a high throughput analytical tool to detect nobility. FTIR spectra (1800-800 cm−1) from 138 root powder samples were analyzed using Principal Component Analysis (PCA). Nobles from Vanuatu and from Polynesia were not differentiated from each other but were differentiated from poor quality P. methysticum cultivars and from var. wichmannii. Linear Discriminant Analysis (LDA) improved the differentiation of Nobles from others. Samples were then classified in two groups: Nobles (Vanuatu + Polynesia) and non-Nobles. A learning and a test sets were composed at random. PLS-DA (Partial Least Square Discriminant Analysis) allowed the differentiation of Nobles with a prediction accuracy over 96.9%. FTIR has potential for kava quality control. The method described here is simple, fast, eco-friendly, and requires less than 0.5 g of root powder. Its routine application could greatly contribute to guarantee kava quality and protect the international markets. |
format |
article |
topic_facet |
Piper methysticum variété marqueur génétique spectroscopie infrarouge variation génétique germoplasme génotype http://aims.fao.org/aos/agrovoc/c_5918 http://aims.fao.org/aos/agrovoc/c_8157 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_28568 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_3249 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_5555 http://aims.fao.org/aos/agrovoc/c_5159 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_3506 http://aims.fao.org/aos/agrovoc/c_2895 http://aims.fao.org/aos/agrovoc/c_3094 http://aims.fao.org/aos/agrovoc/c_3423 |
author |
Lebot, Vincent Labouisse, Jean-Pierre Rivallan, Ronan Kaoh, Juliane Davrieux, Fabrice |
author_facet |
Lebot, Vincent Labouisse, Jean-Pierre Rivallan, Ronan Kaoh, Juliane Davrieux, Fabrice |
author_sort |
Lebot, Vincent |
title |
Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
title_short |
Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
title_full |
Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
title_fullStr |
Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
title_full_unstemmed |
Use of SSR markers and FTIR chemometrics to assess the nobility of kava cultivars from the Pacific |
title_sort |
use of ssr markers and ftir chemometrics to assess the nobility of kava cultivars from the pacific |
url |
http://agritrop.cirad.fr/609678/ http://agritrop.cirad.fr/609678/1/Use%20of%20SSR%20markers%20and%20FTIR%20chemometrics%20to%20assess%20the%20nobility%20of%20kava_Food%20Control_2024.pdf |
work_keys_str_mv |
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