Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles

Sesame provides one of the most nutritious and healthy vegetable oils, sparking an increasing demand of its seeds. However, with the low yield and productivity of sesame, there is still a huge gap between the seed demand and supply. Improving the root system has a high potential to increase crop productivity, but information on the diversity of the sesame root systems is still lacking. In this study, 40 diverse sesame varieties were grown in soil and hydroponics systems and the diversity of the root system was investigated. The results showed that sesame holds a large root morphological and anatomical diversity, which can be harnessed in breeding programmes. Based on the clustering of the genotypes in hydroponics and soil culture systems, we found that similar genotypes were commonly clustered either in the small-root or in the big-root group, indicating that the hydroponics system can be employed for a large-scale root phenotyping. Our results further revealed that the root biomass positively contributes to increased seed yield in sesame, based on multi-environmental trials. By comparing the root transcriptome of two contrasting genotypes, 2897 differentially expressed genes were detected and they were enriched in phenylpropanoid biosynthesis, starch and sucrose metabolism, stilbenoid, diarylheptanoid and gingerol biosynthesis, flavonoid biosynthesis, suggesting that these pathways are crucial for sesame root growth and development. Overall, this study sheds light on the diversity of sesame root system and offers the basis for improving root traits and increasing sesame seed yield.

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Main Authors: Su, Ruqi, Zhou, Rong, Mmadi, Marie Ali, Li, Donghua, Qin, Lu, Liu, Aili, Wang, Jiankang, Gao, Yuan, Wei, Mengyuan, Shi, Lisong, Wu, Ziming, You, Jun, Zhang, Xiurong, Dossa, Komivi
Format: article biblioteca
Language:eng
Subjects:système racinaire, Sesamum indicum, amélioration des plantes, expression des gènes, génotype, rendement des cultures, racine, légume racine, phénotype, croissance, Transcription génique, rhizosphère, résistance à la sécheresse, sélection, http://aims.fao.org/aos/agrovoc/c_16034, http://aims.fao.org/aos/agrovoc/c_6992, http://aims.fao.org/aos/agrovoc/c_5956, http://aims.fao.org/aos/agrovoc/c_27527, http://aims.fao.org/aos/agrovoc/c_3225, http://aims.fao.org/aos/agrovoc/c_10176, http://aims.fao.org/aos/agrovoc/c_6651, http://aims.fao.org/aos/agrovoc/c_6647, http://aims.fao.org/aos/agrovoc/c_5776, http://aims.fao.org/aos/agrovoc/c_3394, http://aims.fao.org/aos/agrovoc/c_35128, http://aims.fao.org/aos/agrovoc/c_6569, http://aims.fao.org/aos/agrovoc/c_2392, http://aims.fao.org/aos/agrovoc/c_6951, http://aims.fao.org/aos/agrovoc/c_1556,
Online Access:http://agritrop.cirad.fr/608269/
http://agritrop.cirad.fr/608269/1/s00425-019-03242-y.pdf
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spelling dig-cirad-fr-6082692024-02-13T05:32:19Z http://agritrop.cirad.fr/608269/ http://agritrop.cirad.fr/608269/ Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles. Su Ruqi, Zhou Rong, Mmadi Marie Ali, Li Donghua, Qin Lu, Liu Aili, Wang Jiankang, Gao Yuan, Wei Mengyuan, Shi Lisong, Wu Ziming, You Jun, Zhang Xiurong, Dossa Komivi. 2019. Planta, 250 : 1461-1474.https://doi.org/10.1007/s00425-019-03242-y <https://doi.org/10.1007/s00425-019-03242-y> Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles Su, Ruqi Zhou, Rong Mmadi, Marie Ali Li, Donghua Qin, Lu Liu, Aili Wang, Jiankang Gao, Yuan Wei, Mengyuan Shi, Lisong Wu, Ziming You, Jun Zhang, Xiurong Dossa, Komivi eng 2019 Planta système racinaire Sesamum indicum amélioration des plantes expression des gènes génotype rendement des cultures racine légume racine phénotype croissance Transcription génique rhizosphère résistance à la sécheresse sélection http://aims.fao.org/aos/agrovoc/c_16034 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_6651 http://aims.fao.org/aos/agrovoc/c_6647 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_2392 http://aims.fao.org/aos/agrovoc/c_6951 Chine http://aims.fao.org/aos/agrovoc/c_1556 Sesame provides one of the most nutritious and healthy vegetable oils, sparking an increasing demand of its seeds. However, with the low yield and productivity of sesame, there is still a huge gap between the seed demand and supply. Improving the root system has a high potential to increase crop productivity, but information on the diversity of the sesame root systems is still lacking. In this study, 40 diverse sesame varieties were grown in soil and hydroponics systems and the diversity of the root system was investigated. The results showed that sesame holds a large root morphological and anatomical diversity, which can be harnessed in breeding programmes. Based on the clustering of the genotypes in hydroponics and soil culture systems, we found that similar genotypes were commonly clustered either in the small-root or in the big-root group, indicating that the hydroponics system can be employed for a large-scale root phenotyping. Our results further revealed that the root biomass positively contributes to increased seed yield in sesame, based on multi-environmental trials. By comparing the root transcriptome of two contrasting genotypes, 2897 differentially expressed genes were detected and they were enriched in phenylpropanoid biosynthesis, starch and sucrose metabolism, stilbenoid, diarylheptanoid and gingerol biosynthesis, flavonoid biosynthesis, suggesting that these pathways are crucial for sesame root growth and development. Overall, this study sheds light on the diversity of sesame root system and offers the basis for improving root traits and increasing sesame seed yield. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/608269/1/s00425-019-03242-y.pdf text cc_by info:eu-repo/semantics/restrictedAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1007/s00425-019-03242-y 10.1007/s00425-019-03242-y info:eu-repo/semantics/altIdentifier/doi/10.1007/s00425-019-03242-y info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00425-019-03242-y info:eu-repo/semantics/dataset/purl/https://www.ncbi.nlm.nih.gov/bioproject/PRJNA552167
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic système racinaire
Sesamum indicum
amélioration des plantes
expression des gènes
génotype
rendement des cultures
racine
légume racine
phénotype
croissance
Transcription génique
rhizosphère
résistance à la sécheresse
sélection
http://aims.fao.org/aos/agrovoc/c_16034
http://aims.fao.org/aos/agrovoc/c_6992
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_3225
http://aims.fao.org/aos/agrovoc/c_10176
http://aims.fao.org/aos/agrovoc/c_6651
http://aims.fao.org/aos/agrovoc/c_6647
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3394
http://aims.fao.org/aos/agrovoc/c_35128
http://aims.fao.org/aos/agrovoc/c_6569
http://aims.fao.org/aos/agrovoc/c_2392
http://aims.fao.org/aos/agrovoc/c_6951
http://aims.fao.org/aos/agrovoc/c_1556
système racinaire
Sesamum indicum
amélioration des plantes
expression des gènes
génotype
rendement des cultures
racine
légume racine
phénotype
croissance
Transcription génique
rhizosphère
résistance à la sécheresse
sélection
http://aims.fao.org/aos/agrovoc/c_16034
http://aims.fao.org/aos/agrovoc/c_6992
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_3225
http://aims.fao.org/aos/agrovoc/c_10176
http://aims.fao.org/aos/agrovoc/c_6651
http://aims.fao.org/aos/agrovoc/c_6647
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3394
http://aims.fao.org/aos/agrovoc/c_35128
http://aims.fao.org/aos/agrovoc/c_6569
http://aims.fao.org/aos/agrovoc/c_2392
http://aims.fao.org/aos/agrovoc/c_6951
http://aims.fao.org/aos/agrovoc/c_1556
spellingShingle système racinaire
Sesamum indicum
amélioration des plantes
expression des gènes
génotype
rendement des cultures
racine
légume racine
phénotype
croissance
Transcription génique
rhizosphère
résistance à la sécheresse
sélection
http://aims.fao.org/aos/agrovoc/c_16034
http://aims.fao.org/aos/agrovoc/c_6992
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_3225
http://aims.fao.org/aos/agrovoc/c_10176
http://aims.fao.org/aos/agrovoc/c_6651
http://aims.fao.org/aos/agrovoc/c_6647
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3394
http://aims.fao.org/aos/agrovoc/c_35128
http://aims.fao.org/aos/agrovoc/c_6569
http://aims.fao.org/aos/agrovoc/c_2392
http://aims.fao.org/aos/agrovoc/c_6951
http://aims.fao.org/aos/agrovoc/c_1556
système racinaire
Sesamum indicum
amélioration des plantes
expression des gènes
génotype
rendement des cultures
racine
légume racine
phénotype
croissance
Transcription génique
rhizosphère
résistance à la sécheresse
sélection
http://aims.fao.org/aos/agrovoc/c_16034
http://aims.fao.org/aos/agrovoc/c_6992
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_3225
http://aims.fao.org/aos/agrovoc/c_10176
http://aims.fao.org/aos/agrovoc/c_6651
http://aims.fao.org/aos/agrovoc/c_6647
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3394
http://aims.fao.org/aos/agrovoc/c_35128
http://aims.fao.org/aos/agrovoc/c_6569
http://aims.fao.org/aos/agrovoc/c_2392
http://aims.fao.org/aos/agrovoc/c_6951
http://aims.fao.org/aos/agrovoc/c_1556
Su, Ruqi
Zhou, Rong
Mmadi, Marie Ali
Li, Donghua
Qin, Lu
Liu, Aili
Wang, Jiankang
Gao, Yuan
Wei, Mengyuan
Shi, Lisong
Wu, Ziming
You, Jun
Zhang, Xiurong
Dossa, Komivi
Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
description Sesame provides one of the most nutritious and healthy vegetable oils, sparking an increasing demand of its seeds. However, with the low yield and productivity of sesame, there is still a huge gap between the seed demand and supply. Improving the root system has a high potential to increase crop productivity, but information on the diversity of the sesame root systems is still lacking. In this study, 40 diverse sesame varieties were grown in soil and hydroponics systems and the diversity of the root system was investigated. The results showed that sesame holds a large root morphological and anatomical diversity, which can be harnessed in breeding programmes. Based on the clustering of the genotypes in hydroponics and soil culture systems, we found that similar genotypes were commonly clustered either in the small-root or in the big-root group, indicating that the hydroponics system can be employed for a large-scale root phenotyping. Our results further revealed that the root biomass positively contributes to increased seed yield in sesame, based on multi-environmental trials. By comparing the root transcriptome of two contrasting genotypes, 2897 differentially expressed genes were detected and they were enriched in phenylpropanoid biosynthesis, starch and sucrose metabolism, stilbenoid, diarylheptanoid and gingerol biosynthesis, flavonoid biosynthesis, suggesting that these pathways are crucial for sesame root growth and development. Overall, this study sheds light on the diversity of sesame root system and offers the basis for improving root traits and increasing sesame seed yield.
format article
topic_facet système racinaire
Sesamum indicum
amélioration des plantes
expression des gènes
génotype
rendement des cultures
racine
légume racine
phénotype
croissance
Transcription génique
rhizosphère
résistance à la sécheresse
sélection
http://aims.fao.org/aos/agrovoc/c_16034
http://aims.fao.org/aos/agrovoc/c_6992
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_27527
http://aims.fao.org/aos/agrovoc/c_3225
http://aims.fao.org/aos/agrovoc/c_10176
http://aims.fao.org/aos/agrovoc/c_6651
http://aims.fao.org/aos/agrovoc/c_6647
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3394
http://aims.fao.org/aos/agrovoc/c_35128
http://aims.fao.org/aos/agrovoc/c_6569
http://aims.fao.org/aos/agrovoc/c_2392
http://aims.fao.org/aos/agrovoc/c_6951
http://aims.fao.org/aos/agrovoc/c_1556
author Su, Ruqi
Zhou, Rong
Mmadi, Marie Ali
Li, Donghua
Qin, Lu
Liu, Aili
Wang, Jiankang
Gao, Yuan
Wei, Mengyuan
Shi, Lisong
Wu, Ziming
You, Jun
Zhang, Xiurong
Dossa, Komivi
author_facet Su, Ruqi
Zhou, Rong
Mmadi, Marie Ali
Li, Donghua
Qin, Lu
Liu, Aili
Wang, Jiankang
Gao, Yuan
Wei, Mengyuan
Shi, Lisong
Wu, Ziming
You, Jun
Zhang, Xiurong
Dossa, Komivi
author_sort Su, Ruqi
title Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
title_short Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
title_full Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
title_fullStr Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
title_full_unstemmed Root diversity in sesame (Sesamum indicum L.): insights into the morphological, anatomical and gene expression profiles
title_sort root diversity in sesame (sesamum indicum l.): insights into the morphological, anatomical and gene expression profiles
url http://agritrop.cirad.fr/608269/
http://agritrop.cirad.fr/608269/1/s00425-019-03242-y.pdf
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