Transcriptomic profiling of sesame during waterlogging and recovery
Sesame is naturally adapted to arid environments but highly susceptible to waterlogging stress. A few hours of waterlogging (lasting over 36 h) are detrimental to the crop growth, yield and survival. To better understand the molecular mechanisms underlying sesame responses to waterlogging and recovery, it is essential to design a high-resolution time-series experiment. In this study, we reported the RNA-seq profiling of two contrasting genotypes under waterlogging and recovery. The plants were grown in pots and subjected to waterlogging treatment at the flowering stage for 36 h and subsequently, 12 h drainage. Root samples were collected in triplicate at 22 time points under waterlogging/drainage treatments and at 10 time points in the control condition. This represents a total of 195 biological samples and the RNA-seq yielded over eight billion reads. Basic data analyses demonstrated a clear separation of transcriptomes from control, waterlogging and drainage treatments. Overall, the generated high-quality and comprehensive RNA-seq resources will undoubtedly advance our understanding of waterlogging/drainage responses in a non-model sensitive crop.
Main Authors: | , , , , , , , , , , , , |
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Format: | article biblioteca |
Language: | eng |
Subjects: | expression des gènes, Sesamum indicum, rendement des cultures, http://aims.fao.org/aos/agrovoc/c_27527, http://aims.fao.org/aos/agrovoc/c_6992, http://aims.fao.org/aos/agrovoc/c_10176, http://aims.fao.org/aos/agrovoc/c_1556, |
Online Access: | http://agritrop.cirad.fr/608266/ http://agritrop.cirad.fr/608266/1/s41597-019-0226-z.pdf |
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dig-cirad-fr-6082662024-02-13T08:33:04Z http://agritrop.cirad.fr/608266/ http://agritrop.cirad.fr/608266/ Transcriptomic profiling of sesame during waterlogging and recovery. Dossa Komivi, You Jun, Wang Linhai, Zhang Yanxin, Li Donghua, Zhou Rong, Yu Jingyin, Wei Xin, Zhu Xiaodong, Jiang Shiyang, Gao Yuan, Mmadi Marie Ali, Zhang Xiurong. 2019. Scientific Data, 6:204, 5 p.https://doi.org/10.1038/s41597-019-0226-z <https://doi.org/10.1038/s41597-019-0226-z> Transcriptomic profiling of sesame during waterlogging and recovery Dossa, Komivi You, Jun Wang, Linhai Zhang, Yanxin Li, Donghua Zhou, Rong Yu, Jingyin Wei, Xin Zhu, Xiaodong Jiang, Shiyang Gao, Yuan Mmadi, Marie Ali Zhang, Xiurong eng 2019 Scientific Data expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 Chine http://aims.fao.org/aos/agrovoc/c_1556 Sesame is naturally adapted to arid environments but highly susceptible to waterlogging stress. A few hours of waterlogging (lasting over 36 h) are detrimental to the crop growth, yield and survival. To better understand the molecular mechanisms underlying sesame responses to waterlogging and recovery, it is essential to design a high-resolution time-series experiment. In this study, we reported the RNA-seq profiling of two contrasting genotypes under waterlogging and recovery. The plants were grown in pots and subjected to waterlogging treatment at the flowering stage for 36 h and subsequently, 12 h drainage. Root samples were collected in triplicate at 22 time points under waterlogging/drainage treatments and at 10 time points in the control condition. This represents a total of 195 biological samples and the RNA-seq yielded over eight billion reads. Basic data analyses demonstrated a clear separation of transcriptomes from control, waterlogging and drainage treatments. Overall, the generated high-quality and comprehensive RNA-seq resources will undoubtedly advance our understanding of waterlogging/drainage responses in a non-model sensitive crop. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/608266/1/s41597-019-0226-z.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1038/s41597-019-0226-z 10.1038/s41597-019-0226-z info:eu-repo/semantics/altIdentifier/doi/10.1038/s41597-019-0226-z info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1038/s41597-019-0226-z info:eu-repo/semantics/dataset/purl/https://www.ncbi.nlm.nih.gov/sra/SRP181800 info:eu-repo/semantics/dataset/purl/https://identifiers.org/geo:GSE133186 info:eu-repo/semantics/reference/purl/https://doi.org/10.6084/m9.figshare.c.4551407 |
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expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_1556 expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_1556 |
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expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_1556 expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_1556 Dossa, Komivi You, Jun Wang, Linhai Zhang, Yanxin Li, Donghua Zhou, Rong Yu, Jingyin Wei, Xin Zhu, Xiaodong Jiang, Shiyang Gao, Yuan Mmadi, Marie Ali Zhang, Xiurong Transcriptomic profiling of sesame during waterlogging and recovery |
description |
Sesame is naturally adapted to arid environments but highly susceptible to waterlogging stress. A few hours of waterlogging (lasting over 36 h) are detrimental to the crop growth, yield and survival. To better understand the molecular mechanisms underlying sesame responses to waterlogging and recovery, it is essential to design a high-resolution time-series experiment. In this study, we reported the RNA-seq profiling of two contrasting genotypes under waterlogging and recovery. The plants were grown in pots and subjected to waterlogging treatment at the flowering stage for 36 h and subsequently, 12 h drainage. Root samples were collected in triplicate at 22 time points under waterlogging/drainage treatments and at 10 time points in the control condition. This represents a total of 195 biological samples and the RNA-seq yielded over eight billion reads. Basic data analyses demonstrated a clear separation of transcriptomes from control, waterlogging and drainage treatments. Overall, the generated high-quality and comprehensive RNA-seq resources will undoubtedly advance our understanding of waterlogging/drainage responses in a non-model sensitive crop. |
format |
article |
topic_facet |
expression des gènes Sesamum indicum rendement des cultures http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_6992 http://aims.fao.org/aos/agrovoc/c_10176 http://aims.fao.org/aos/agrovoc/c_1556 |
author |
Dossa, Komivi You, Jun Wang, Linhai Zhang, Yanxin Li, Donghua Zhou, Rong Yu, Jingyin Wei, Xin Zhu, Xiaodong Jiang, Shiyang Gao, Yuan Mmadi, Marie Ali Zhang, Xiurong |
author_facet |
Dossa, Komivi You, Jun Wang, Linhai Zhang, Yanxin Li, Donghua Zhou, Rong Yu, Jingyin Wei, Xin Zhu, Xiaodong Jiang, Shiyang Gao, Yuan Mmadi, Marie Ali Zhang, Xiurong |
author_sort |
Dossa, Komivi |
title |
Transcriptomic profiling of sesame during waterlogging and recovery |
title_short |
Transcriptomic profiling of sesame during waterlogging and recovery |
title_full |
Transcriptomic profiling of sesame during waterlogging and recovery |
title_fullStr |
Transcriptomic profiling of sesame during waterlogging and recovery |
title_full_unstemmed |
Transcriptomic profiling of sesame during waterlogging and recovery |
title_sort |
transcriptomic profiling of sesame during waterlogging and recovery |
url |
http://agritrop.cirad.fr/608266/ http://agritrop.cirad.fr/608266/1/s41597-019-0226-z.pdf |
work_keys_str_mv |
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1792500764420079616 |