Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp.
A novel betaflexivirus, tentatively named “miscanthus virus M” (MiVM), was isolated from Miscanthus sp. The complete genome of MiVM is 7,388 nt in length (excluding the poly(A) tail). It contains five open reading frames and has a genome organization similar to those of members of the families Alphaflexiviridae and Betaflexiviridae (subfamily Quinvirinae). The amino acid sequences of both the replicase and coat protein shared less than 45% identity with the corresponding sequences of members of either family. Phylogenetic analysis confirmed that MiVM belongs to the family Betaflexiviridae and subfamily Quinvirinae but it was too distantly related to be included in any currently recognized genus in this family. We therefore propose that miscanthus virus M represents a new species and a new genus in the family Betaflexiviridae.
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Subjects: | H20 - Maladies des plantes, virus des végétaux, phylogénie, Betaflexiviridae, analyse phylogénétique, Miscanthus, génome, phylogénétique, acide aminé, séquence d'acides aminés, http://aims.fao.org/aos/agrovoc/c_5985, http://aims.fao.org/aos/agrovoc/c_13325, http://aims.fao.org/aos/agrovoc/c_87c57fca, http://aims.fao.org/aos/agrovoc/c_1cf8cf0c, http://aims.fao.org/aos/agrovoc/c_26574, http://aims.fao.org/aos/agrovoc/c_3224, http://aims.fao.org/aos/agrovoc/c_abb380d7, http://aims.fao.org/aos/agrovoc/c_342, http://aims.fao.org/aos/agrovoc/c_37202, |
Online Access: | http://agritrop.cirad.fr/607929/ http://agritrop.cirad.fr/607929/1/2024%20Abrahamian_Miscanthus%20virus%20M.pdf |
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dig-cirad-fr-6079292024-03-15T09:37:54Z http://agritrop.cirad.fr/607929/ http://agritrop.cirad.fr/607929/ Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. Abrahamian Peter, Grinstead Samuel, Kinard Gary, Goenaga Ricardo, Rott Philippe, Mollov Dimitre S.. 2024. Archives of Virology, 169:27, 5 p.https://doi.org/10.1007/s00705-024-05966-z <https://doi.org/10.1007/s00705-024-05966-z> Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. Abrahamian, Peter Grinstead, Samuel Kinard, Gary Goenaga, Ricardo Rott, Philippe Mollov, Dimitre S. eng 2024 Archives of Virology H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 A novel betaflexivirus, tentatively named “miscanthus virus M” (MiVM), was isolated from Miscanthus sp. The complete genome of MiVM is 7,388 nt in length (excluding the poly(A) tail). It contains five open reading frames and has a genome organization similar to those of members of the families Alphaflexiviridae and Betaflexiviridae (subfamily Quinvirinae). The amino acid sequences of both the replicase and coat protein shared less than 45% identity with the corresponding sequences of members of either family. Phylogenetic analysis confirmed that MiVM belongs to the family Betaflexiviridae and subfamily Quinvirinae but it was too distantly related to be included in any currently recognized genus in this family. We therefore propose that miscanthus virus M represents a new species and a new genus in the family Betaflexiviridae. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/607929/1/2024%20Abrahamian_Miscanthus%20virus%20M.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s00705-024-05966-z 10.1007/s00705-024-05966-z info:eu-repo/semantics/altIdentifier/doi/10.1007/s00705-024-05966-z info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00705-024-05966-z info:eu-repo/semantics/dataset/purl/https://www.ncbi.nlm.nih.gov/nuccore/ON986335 |
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H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 |
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H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 Abrahamian, Peter Grinstead, Samuel Kinard, Gary Goenaga, Ricardo Rott, Philippe Mollov, Dimitre S. Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
description |
A novel betaflexivirus, tentatively named “miscanthus virus M” (MiVM), was isolated from Miscanthus sp. The complete genome of MiVM is 7,388 nt in length (excluding the poly(A) tail). It contains five open reading frames and has a genome organization similar to those of members of the families Alphaflexiviridae and Betaflexiviridae (subfamily Quinvirinae). The amino acid sequences of both the replicase and coat protein shared less than 45% identity with the corresponding sequences of members of either family. Phylogenetic analysis confirmed that MiVM belongs to the family Betaflexiviridae and subfamily Quinvirinae but it was too distantly related to be included in any currently recognized genus in this family. We therefore propose that miscanthus virus M represents a new species and a new genus in the family Betaflexiviridae. |
format |
article |
topic_facet |
H20 - Maladies des plantes virus des végétaux phylogénie Betaflexiviridae analyse phylogénétique Miscanthus génome phylogénétique acide aminé séquence d'acides aminés http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_87c57fca http://aims.fao.org/aos/agrovoc/c_1cf8cf0c http://aims.fao.org/aos/agrovoc/c_26574 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_abb380d7 http://aims.fao.org/aos/agrovoc/c_342 http://aims.fao.org/aos/agrovoc/c_37202 |
author |
Abrahamian, Peter Grinstead, Samuel Kinard, Gary Goenaga, Ricardo Rott, Philippe Mollov, Dimitre S. |
author_facet |
Abrahamian, Peter Grinstead, Samuel Kinard, Gary Goenaga, Ricardo Rott, Philippe Mollov, Dimitre S. |
author_sort |
Abrahamian, Peter |
title |
Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
title_short |
Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
title_full |
Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
title_fullStr |
Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
title_full_unstemmed |
Complete sequence and genome characterization of miscanthus virus M, a new betaflexivirus from Miscanthus sp. |
title_sort |
complete sequence and genome characterization of miscanthus virus m, a new betaflexivirus from miscanthus sp. |
url |
http://agritrop.cirad.fr/607929/ http://agritrop.cirad.fr/607929/1/2024%20Abrahamian_Miscanthus%20virus%20M.pdf |
work_keys_str_mv |
AT abrahamianpeter completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp AT grinsteadsamuel completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp AT kinardgary completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp AT goenagaricardo completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp AT rottphilippe completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp AT mollovdimitres completesequenceandgenomecharacterizationofmiscanthusvirusmanewbetaflexivirusfrommiscanthussp |
_version_ |
1794797477363187712 |