Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes

Structural complexity plays a key role in the functioning of coral reef ecosystems. Reef-building corals are major contributors to this complexity, providing shelter and food for numerous invertebrates and fish species. Both structural complexity and shelter capacity of reefscapes are determined by several components such as spurs and grooves, slope, caves and holes, vegetation and coral colonies. Quantifying the shelter capacity from coral colonies to reefscapes is a fundamental step to estimating ecosystem potential to support biodiversity. Here, we applied underwater photogrammetry to quantify shelter volumes provided by individual coral colonies. Overall, 120 3D models of coral colonies from branching, massive, columnar and tabular growth forms were studied. Three reefscapes were also 3D modeled. The study encompasses three Indo-Pacific Islands: Reunion, Europa and New Caledonia. At the colony level, measurements of diameter, planar area, surface and shelter volume were computed. At the reefscape, the diameter and planar area of each colony were extracted from orthomosaics and then used to estimate shelter capacity. Linear models had high accuracy for predicting shelter volume (a 3D metric) from 2D metrics: the diameter= 83.1%, R2= 0.95; the planar area= 87.5%, R2= 0.95 and the colony surface= 87.3%, R2= 0.96. The surface complexity and the shelter volume of the colonies allowed inferring the size of shelters provided by coral growth forms. Quantitative descriptors (i.e. relative percentage of shelter by growth form, the abundance of coral colonies, “Shannon-Shelter Index”) revealed reefscape-scale shelter differences. Our major finding is that planar area and diameter of coral colonies are satisfactory proxies for estimating shelter volume. These new proxies allow 2D metrics to quantify 3D shelter provision, which can support scientists and managers in conservation actions since such metrics are widely used in monitoring programs. Future investigations on the relationships between shelter provision and reef biodiversity will improve the understanding of these complex ecosystems.

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Main Authors: Urbina-Barreto, Isabel, Chiroleu, Frédéric, Pinel, Romain, Fréchon, Louis, Mahamadaly, Vincent, Elise, Simon, Kulbicki, Michel, Quod, Jean-Pascal, Dutrieux, Eric, Garnier, Rémi, Bruggemann, J. Henrich, Penin, Lucie, Adjeroud, Mehdi
Format: article biblioteca
Language:eng
Subjects:récif corallien, biodiversité, récif, corail, port de la plante, écosystème, http://aims.fao.org/aos/agrovoc/c_1880, http://aims.fao.org/aos/agrovoc/c_33949, http://aims.fao.org/aos/agrovoc/c_92343, http://aims.fao.org/aos/agrovoc/c_1882, http://aims.fao.org/aos/agrovoc/c_5969, http://aims.fao.org/aos/agrovoc/c_2482, http://aims.fao.org/aos/agrovoc/c_5155, http://aims.fao.org/aos/agrovoc/c_3081,
Online Access:http://agritrop.cirad.fr/605785/
http://agritrop.cirad.fr/605785/1/ID605785.pdf
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spelling dig-cirad-fr-6057852024-01-29T06:06:06Z http://agritrop.cirad.fr/605785/ http://agritrop.cirad.fr/605785/ Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes. Urbina-Barreto Isabel, Chiroleu Frédéric, Pinel Romain, Fréchon Louis, Mahamadaly Vincent, Elise Simon, Kulbicki Michel, Quod Jean-Pascal, Dutrieux Eric, Garnier Rémi, Bruggemann J. Henrich, Penin Lucie, Adjeroud Mehdi. 2021. Ecological Indicators, 121:107151, 12 p.https://doi.org/10.1016/j.ecolind.2020.107151 <https://doi.org/10.1016/j.ecolind.2020.107151> Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes Urbina-Barreto, Isabel Chiroleu, Frédéric Pinel, Romain Fréchon, Louis Mahamadaly, Vincent Elise, Simon Kulbicki, Michel Quod, Jean-Pascal Dutrieux, Eric Garnier, Rémi Bruggemann, J. Henrich Penin, Lucie Adjeroud, Mehdi eng 2021 Ecological Indicators récif corallien biodiversité récif corail port de la plante écosystème http://aims.fao.org/aos/agrovoc/c_1880 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_92343 http://aims.fao.org/aos/agrovoc/c_1882 http://aims.fao.org/aos/agrovoc/c_5969 http://aims.fao.org/aos/agrovoc/c_2482 Nouvelle-Calédonie France http://aims.fao.org/aos/agrovoc/c_5155 http://aims.fao.org/aos/agrovoc/c_3081 Structural complexity plays a key role in the functioning of coral reef ecosystems. Reef-building corals are major contributors to this complexity, providing shelter and food for numerous invertebrates and fish species. Both structural complexity and shelter capacity of reefscapes are determined by several components such as spurs and grooves, slope, caves and holes, vegetation and coral colonies. Quantifying the shelter capacity from coral colonies to reefscapes is a fundamental step to estimating ecosystem potential to support biodiversity. Here, we applied underwater photogrammetry to quantify shelter volumes provided by individual coral colonies. Overall, 120 3D models of coral colonies from branching, massive, columnar and tabular growth forms were studied. Three reefscapes were also 3D modeled. The study encompasses three Indo-Pacific Islands: Reunion, Europa and New Caledonia. At the colony level, measurements of diameter, planar area, surface and shelter volume were computed. At the reefscape, the diameter and planar area of each colony were extracted from orthomosaics and then used to estimate shelter capacity. Linear models had high accuracy for predicting shelter volume (a 3D metric) from 2D metrics: the diameter= 83.1%, R2= 0.95; the planar area= 87.5%, R2= 0.95 and the colony surface= 87.3%, R2= 0.96. The surface complexity and the shelter volume of the colonies allowed inferring the size of shelters provided by coral growth forms. Quantitative descriptors (i.e. relative percentage of shelter by growth form, the abundance of coral colonies, “Shannon-Shelter Index”) revealed reefscape-scale shelter differences. Our major finding is that planar area and diameter of coral colonies are satisfactory proxies for estimating shelter volume. These new proxies allow 2D metrics to quantify 3D shelter provision, which can support scientists and managers in conservation actions since such metrics are widely used in monitoring programs. Future investigations on the relationships between shelter provision and reef biodiversity will improve the understanding of these complex ecosystems. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/605785/1/ID605785.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1016/j.ecolind.2020.107151 10.1016/j.ecolind.2020.107151 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ecolind.2020.107151 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1016/j.ecolind.2020.107151
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic récif corallien
biodiversité
récif
corail
port de la plante
écosystème
http://aims.fao.org/aos/agrovoc/c_1880
http://aims.fao.org/aos/agrovoc/c_33949
http://aims.fao.org/aos/agrovoc/c_92343
http://aims.fao.org/aos/agrovoc/c_1882
http://aims.fao.org/aos/agrovoc/c_5969
http://aims.fao.org/aos/agrovoc/c_2482
http://aims.fao.org/aos/agrovoc/c_5155
http://aims.fao.org/aos/agrovoc/c_3081
récif corallien
biodiversité
récif
corail
port de la plante
écosystème
http://aims.fao.org/aos/agrovoc/c_1880
http://aims.fao.org/aos/agrovoc/c_33949
http://aims.fao.org/aos/agrovoc/c_92343
http://aims.fao.org/aos/agrovoc/c_1882
http://aims.fao.org/aos/agrovoc/c_5969
http://aims.fao.org/aos/agrovoc/c_2482
http://aims.fao.org/aos/agrovoc/c_5155
http://aims.fao.org/aos/agrovoc/c_3081
spellingShingle récif corallien
biodiversité
récif
corail
port de la plante
écosystème
http://aims.fao.org/aos/agrovoc/c_1880
http://aims.fao.org/aos/agrovoc/c_33949
http://aims.fao.org/aos/agrovoc/c_92343
http://aims.fao.org/aos/agrovoc/c_1882
http://aims.fao.org/aos/agrovoc/c_5969
http://aims.fao.org/aos/agrovoc/c_2482
http://aims.fao.org/aos/agrovoc/c_5155
http://aims.fao.org/aos/agrovoc/c_3081
récif corallien
biodiversité
récif
corail
port de la plante
écosystème
http://aims.fao.org/aos/agrovoc/c_1880
http://aims.fao.org/aos/agrovoc/c_33949
http://aims.fao.org/aos/agrovoc/c_92343
http://aims.fao.org/aos/agrovoc/c_1882
http://aims.fao.org/aos/agrovoc/c_5969
http://aims.fao.org/aos/agrovoc/c_2482
http://aims.fao.org/aos/agrovoc/c_5155
http://aims.fao.org/aos/agrovoc/c_3081
Urbina-Barreto, Isabel
Chiroleu, Frédéric
Pinel, Romain
Fréchon, Louis
Mahamadaly, Vincent
Elise, Simon
Kulbicki, Michel
Quod, Jean-Pascal
Dutrieux, Eric
Garnier, Rémi
Bruggemann, J. Henrich
Penin, Lucie
Adjeroud, Mehdi
Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
description Structural complexity plays a key role in the functioning of coral reef ecosystems. Reef-building corals are major contributors to this complexity, providing shelter and food for numerous invertebrates and fish species. Both structural complexity and shelter capacity of reefscapes are determined by several components such as spurs and grooves, slope, caves and holes, vegetation and coral colonies. Quantifying the shelter capacity from coral colonies to reefscapes is a fundamental step to estimating ecosystem potential to support biodiversity. Here, we applied underwater photogrammetry to quantify shelter volumes provided by individual coral colonies. Overall, 120 3D models of coral colonies from branching, massive, columnar and tabular growth forms were studied. Three reefscapes were also 3D modeled. The study encompasses three Indo-Pacific Islands: Reunion, Europa and New Caledonia. At the colony level, measurements of diameter, planar area, surface and shelter volume were computed. At the reefscape, the diameter and planar area of each colony were extracted from orthomosaics and then used to estimate shelter capacity. Linear models had high accuracy for predicting shelter volume (a 3D metric) from 2D metrics: the diameter= 83.1%, R2= 0.95; the planar area= 87.5%, R2= 0.95 and the colony surface= 87.3%, R2= 0.96. The surface complexity and the shelter volume of the colonies allowed inferring the size of shelters provided by coral growth forms. Quantitative descriptors (i.e. relative percentage of shelter by growth form, the abundance of coral colonies, “Shannon-Shelter Index”) revealed reefscape-scale shelter differences. Our major finding is that planar area and diameter of coral colonies are satisfactory proxies for estimating shelter volume. These new proxies allow 2D metrics to quantify 3D shelter provision, which can support scientists and managers in conservation actions since such metrics are widely used in monitoring programs. Future investigations on the relationships between shelter provision and reef biodiversity will improve the understanding of these complex ecosystems.
format article
topic_facet récif corallien
biodiversité
récif
corail
port de la plante
écosystème
http://aims.fao.org/aos/agrovoc/c_1880
http://aims.fao.org/aos/agrovoc/c_33949
http://aims.fao.org/aos/agrovoc/c_92343
http://aims.fao.org/aos/agrovoc/c_1882
http://aims.fao.org/aos/agrovoc/c_5969
http://aims.fao.org/aos/agrovoc/c_2482
http://aims.fao.org/aos/agrovoc/c_5155
http://aims.fao.org/aos/agrovoc/c_3081
author Urbina-Barreto, Isabel
Chiroleu, Frédéric
Pinel, Romain
Fréchon, Louis
Mahamadaly, Vincent
Elise, Simon
Kulbicki, Michel
Quod, Jean-Pascal
Dutrieux, Eric
Garnier, Rémi
Bruggemann, J. Henrich
Penin, Lucie
Adjeroud, Mehdi
author_facet Urbina-Barreto, Isabel
Chiroleu, Frédéric
Pinel, Romain
Fréchon, Louis
Mahamadaly, Vincent
Elise, Simon
Kulbicki, Michel
Quod, Jean-Pascal
Dutrieux, Eric
Garnier, Rémi
Bruggemann, J. Henrich
Penin, Lucie
Adjeroud, Mehdi
author_sort Urbina-Barreto, Isabel
title Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
title_short Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
title_full Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
title_fullStr Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
title_full_unstemmed Quantifying the shelter capacity of coral reefs using photogrammetric 3D modeling: From colonies to reefscapes
title_sort quantifying the shelter capacity of coral reefs using photogrammetric 3d modeling: from colonies to reefscapes
url http://agritrop.cirad.fr/605785/
http://agritrop.cirad.fr/605785/1/ID605785.pdf
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