Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity

The miracle plant Synsepalum dulcificum is a multipurpose natural sweetener and a promising West African orphan fruit shrub candidate for genetic improvement. Unfortunately, basic knowledge such as phenotypic variation and inheritance estimates required for implementing a breeding program are still lacking. A set of 203 accessions were sampled in two habitats from seven populations spread across the Dahomey Gap (DG) and the Upper Guinea forest (UG) in West Africa. The phenotypic diversity and allometric relationships among functional traits were analysed; the broad-sense heritability was estimated for fruit-traits, and a mini-core collection was developed in the species. Quantitative variation in tree- and fruit-traits was recorded, and multivariate analyses were performed to assess relationships among accessions, whereas heritability was estimated using the coefficient of repeatability. Tree-traits observed in S. dulcificum were more variable than fruit-traits. While habitat-type only affected tree-traits, the provenance population significantly affected both fruit- and tree-traits, with the UG populations outperforming the DG ones. Significant correlations were observed among fruit-traits on one hand, and among tree-traits on the other hand, whereas poor correlations were observed between tree- and fruit-traits. The multivariate analysis grouped accessions in three clusters. Promising individuals for high fruit mass and pulp-dense genotypes' selection were identified within clusters. Repeatability estimates for fruit-traits ranged from 0.015 (edible ratio) to 0.88 (fruit mass). The Core Hunter algorithm enabled the extraction of 41 individuals as robust representatives of the initial set of 203 accessions, and the mapping of this core collection suggested Dahomey Gap as a centre of diversity of the species. These original findings offer opportunities, not only for the genetic improvement of S. dulcificum, but also for targeted ex-situ conservation in the species.

Saved in:
Bibliographic Details
Main Authors: Tchokponhoué, Dèdéou A., Achigan-Dako, Enoch G., N'Danikou, Sognigbé, Nyadanu, Daniel, Kahane, Rémi, Houéto, Jacob, Fassinou Hotegni, Vodjo Nicodème, Odindo, Alfred O., Sibiya, Julia
Format: article biblioteca
Language:eng
Subjects:phénotype, héritabilité, variation génétique, édulcorant, variation phénotypique, conservation des ressources génétiques, amélioration des plantes, héritabilité génotypique, ressource génétique végétale, http://aims.fao.org/aos/agrovoc/c_5776, http://aims.fao.org/aos/agrovoc/c_3570, http://aims.fao.org/aos/agrovoc/c_15975, http://aims.fao.org/aos/agrovoc/c_642, http://aims.fao.org/aos/agrovoc/c_903c4959, http://aims.fao.org/aos/agrovoc/c_37280, http://aims.fao.org/aos/agrovoc/c_5956, http://aims.fao.org/aos/agrovoc/c_1373982832607, http://aims.fao.org/aos/agrovoc/c_37419, http://aims.fao.org/aos/agrovoc/c_875, http://aims.fao.org/aos/agrovoc/c_8355, http://aims.fao.org/aos/agrovoc/c_3423, http://aims.fao.org/aos/agrovoc/c_7801, http://aims.fao.org/aos/agrovoc/c_3253, http://aims.fao.org/aos/agrovoc/c_8500,
Online Access:http://agritrop.cirad.fr/605401/
http://agritrop.cirad.fr/605401/1/605401.pdf
Tags: Add Tag
No Tags, Be the first to tag this record!
id dig-cirad-fr-605401
record_format koha
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic phénotype
héritabilité
variation génétique
édulcorant
variation phénotypique
conservation des ressources génétiques
amélioration des plantes
héritabilité génotypique
ressource génétique végétale
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3570
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_642
http://aims.fao.org/aos/agrovoc/c_903c4959
http://aims.fao.org/aos/agrovoc/c_37280
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_1373982832607
http://aims.fao.org/aos/agrovoc/c_37419
http://aims.fao.org/aos/agrovoc/c_875
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_3423
http://aims.fao.org/aos/agrovoc/c_7801
http://aims.fao.org/aos/agrovoc/c_3253
http://aims.fao.org/aos/agrovoc/c_8500
phénotype
héritabilité
variation génétique
édulcorant
variation phénotypique
conservation des ressources génétiques
amélioration des plantes
héritabilité génotypique
ressource génétique végétale
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3570
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_642
http://aims.fao.org/aos/agrovoc/c_903c4959
http://aims.fao.org/aos/agrovoc/c_37280
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_1373982832607
http://aims.fao.org/aos/agrovoc/c_37419
http://aims.fao.org/aos/agrovoc/c_875
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_3423
http://aims.fao.org/aos/agrovoc/c_7801
http://aims.fao.org/aos/agrovoc/c_3253
http://aims.fao.org/aos/agrovoc/c_8500
spellingShingle phénotype
héritabilité
variation génétique
édulcorant
variation phénotypique
conservation des ressources génétiques
amélioration des plantes
héritabilité génotypique
ressource génétique végétale
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3570
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_642
http://aims.fao.org/aos/agrovoc/c_903c4959
http://aims.fao.org/aos/agrovoc/c_37280
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_1373982832607
http://aims.fao.org/aos/agrovoc/c_37419
http://aims.fao.org/aos/agrovoc/c_875
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_3423
http://aims.fao.org/aos/agrovoc/c_7801
http://aims.fao.org/aos/agrovoc/c_3253
http://aims.fao.org/aos/agrovoc/c_8500
phénotype
héritabilité
variation génétique
édulcorant
variation phénotypique
conservation des ressources génétiques
amélioration des plantes
héritabilité génotypique
ressource génétique végétale
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3570
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_642
http://aims.fao.org/aos/agrovoc/c_903c4959
http://aims.fao.org/aos/agrovoc/c_37280
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_1373982832607
http://aims.fao.org/aos/agrovoc/c_37419
http://aims.fao.org/aos/agrovoc/c_875
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_3423
http://aims.fao.org/aos/agrovoc/c_7801
http://aims.fao.org/aos/agrovoc/c_3253
http://aims.fao.org/aos/agrovoc/c_8500
Tchokponhoué, Dèdéou A.
Achigan-Dako, Enoch G.
N'Danikou, Sognigbé
Nyadanu, Daniel
Kahane, Rémi
Houéto, Jacob
Fassinou Hotegni, Vodjo Nicodème
Odindo, Alfred O.
Sibiya, Julia
Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
description The miracle plant Synsepalum dulcificum is a multipurpose natural sweetener and a promising West African orphan fruit shrub candidate for genetic improvement. Unfortunately, basic knowledge such as phenotypic variation and inheritance estimates required for implementing a breeding program are still lacking. A set of 203 accessions were sampled in two habitats from seven populations spread across the Dahomey Gap (DG) and the Upper Guinea forest (UG) in West Africa. The phenotypic diversity and allometric relationships among functional traits were analysed; the broad-sense heritability was estimated for fruit-traits, and a mini-core collection was developed in the species. Quantitative variation in tree- and fruit-traits was recorded, and multivariate analyses were performed to assess relationships among accessions, whereas heritability was estimated using the coefficient of repeatability. Tree-traits observed in S. dulcificum were more variable than fruit-traits. While habitat-type only affected tree-traits, the provenance population significantly affected both fruit- and tree-traits, with the UG populations outperforming the DG ones. Significant correlations were observed among fruit-traits on one hand, and among tree-traits on the other hand, whereas poor correlations were observed between tree- and fruit-traits. The multivariate analysis grouped accessions in three clusters. Promising individuals for high fruit mass and pulp-dense genotypes' selection were identified within clusters. Repeatability estimates for fruit-traits ranged from 0.015 (edible ratio) to 0.88 (fruit mass). The Core Hunter algorithm enabled the extraction of 41 individuals as robust representatives of the initial set of 203 accessions, and the mapping of this core collection suggested Dahomey Gap as a centre of diversity of the species. These original findings offer opportunities, not only for the genetic improvement of S. dulcificum, but also for targeted ex-situ conservation in the species.
format article
topic_facet phénotype
héritabilité
variation génétique
édulcorant
variation phénotypique
conservation des ressources génétiques
amélioration des plantes
héritabilité génotypique
ressource génétique végétale
http://aims.fao.org/aos/agrovoc/c_5776
http://aims.fao.org/aos/agrovoc/c_3570
http://aims.fao.org/aos/agrovoc/c_15975
http://aims.fao.org/aos/agrovoc/c_642
http://aims.fao.org/aos/agrovoc/c_903c4959
http://aims.fao.org/aos/agrovoc/c_37280
http://aims.fao.org/aos/agrovoc/c_5956
http://aims.fao.org/aos/agrovoc/c_1373982832607
http://aims.fao.org/aos/agrovoc/c_37419
http://aims.fao.org/aos/agrovoc/c_875
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_3423
http://aims.fao.org/aos/agrovoc/c_7801
http://aims.fao.org/aos/agrovoc/c_3253
http://aims.fao.org/aos/agrovoc/c_8500
author Tchokponhoué, Dèdéou A.
Achigan-Dako, Enoch G.
N'Danikou, Sognigbé
Nyadanu, Daniel
Kahane, Rémi
Houéto, Jacob
Fassinou Hotegni, Vodjo Nicodème
Odindo, Alfred O.
Sibiya, Julia
author_facet Tchokponhoué, Dèdéou A.
Achigan-Dako, Enoch G.
N'Danikou, Sognigbé
Nyadanu, Daniel
Kahane, Rémi
Houéto, Jacob
Fassinou Hotegni, Vodjo Nicodème
Odindo, Alfred O.
Sibiya, Julia
author_sort Tchokponhoué, Dèdéou A.
title Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
title_short Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
title_full Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
title_fullStr Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
title_full_unstemmed Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity
title_sort phenotypic variation, functional traits repeatability and core collection inference in synsepalum dulcificum (schumach & thonn.) daniell reveals the dahomey gap as a centre of diversity
url http://agritrop.cirad.fr/605401/
http://agritrop.cirad.fr/605401/1/605401.pdf
work_keys_str_mv AT tchokponhouededeoua phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT achigandakoenochg phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT ndanikousognigbe phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT nyadanudaniel phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT kahaneremi phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT houetojacob phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT fassinouhotegnivodjonicodeme phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT odindoalfredo phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
AT sibiyajulia phenotypicvariationfunctionaltraitsrepeatabilityandcorecollectioninferenceinsynsepalumdulcificumschumachthonndaniellrevealsthedahomeygapasacentreofdiversity
_version_ 1792500586795499520
spelling dig-cirad-fr-6054012024-01-29T06:04:54Z http://agritrop.cirad.fr/605401/ http://agritrop.cirad.fr/605401/ Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity. Tchokponhoué Dèdéou A., Achigan-Dako Enoch G., N'Danikou Sognigbé, Nyadanu Daniel, Kahane Rémi, Houéto Jacob, Fassinou Hotegni Vodjo Nicodème, Odindo Alfred O., Sibiya Julia. 2020. Scientific Reports, 10:19538, 17 p.https:/doi.org/10.1038/s41598-020-76103-4 <https:/doi.org/10.1038/s41598-020-76103-4> Phenotypic variation, functional traits repeatability and core collection inference in Synsepalum dulcificum (Schumach & Thonn.) Daniell reveals the Dahomey Gap as a centre of diversity Tchokponhoué, Dèdéou A. Achigan-Dako, Enoch G. N'Danikou, Sognigbé Nyadanu, Daniel Kahane, Rémi Houéto, Jacob Fassinou Hotegni, Vodjo Nicodème Odindo, Alfred O. Sibiya, Julia eng 2020 Scientific Reports phénotype héritabilité variation génétique édulcorant variation phénotypique conservation des ressources génétiques amélioration des plantes héritabilité génotypique ressource génétique végétale http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_642 http://aims.fao.org/aos/agrovoc/c_903c4959 http://aims.fao.org/aos/agrovoc/c_37280 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_1373982832607 http://aims.fao.org/aos/agrovoc/c_37419 Bénin Afrique occidentale Guinée Togo Ghana République démocratique du Congo http://aims.fao.org/aos/agrovoc/c_875 http://aims.fao.org/aos/agrovoc/c_8355 http://aims.fao.org/aos/agrovoc/c_3423 http://aims.fao.org/aos/agrovoc/c_7801 http://aims.fao.org/aos/agrovoc/c_3253 http://aims.fao.org/aos/agrovoc/c_8500 The miracle plant Synsepalum dulcificum is a multipurpose natural sweetener and a promising West African orphan fruit shrub candidate for genetic improvement. Unfortunately, basic knowledge such as phenotypic variation and inheritance estimates required for implementing a breeding program are still lacking. A set of 203 accessions were sampled in two habitats from seven populations spread across the Dahomey Gap (DG) and the Upper Guinea forest (UG) in West Africa. The phenotypic diversity and allometric relationships among functional traits were analysed; the broad-sense heritability was estimated for fruit-traits, and a mini-core collection was developed in the species. Quantitative variation in tree- and fruit-traits was recorded, and multivariate analyses were performed to assess relationships among accessions, whereas heritability was estimated using the coefficient of repeatability. Tree-traits observed in S. dulcificum were more variable than fruit-traits. While habitat-type only affected tree-traits, the provenance population significantly affected both fruit- and tree-traits, with the UG populations outperforming the DG ones. Significant correlations were observed among fruit-traits on one hand, and among tree-traits on the other hand, whereas poor correlations were observed between tree- and fruit-traits. The multivariate analysis grouped accessions in three clusters. Promising individuals for high fruit mass and pulp-dense genotypes' selection were identified within clusters. Repeatability estimates for fruit-traits ranged from 0.015 (edible ratio) to 0.88 (fruit mass). The Core Hunter algorithm enabled the extraction of 41 individuals as robust representatives of the initial set of 203 accessions, and the mapping of this core collection suggested Dahomey Gap as a centre of diversity of the species. These original findings offer opportunities, not only for the genetic improvement of S. dulcificum, but also for targeted ex-situ conservation in the species. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/605401/1/605401.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https:/doi.org/10.1038/s41598-020-76103-4 10.1038/s41598-020-76103-4 info:eu-repo/semantics/altIdentifier/doi/10.1038/s41598-020-76103-4 info:eu-repo/semantics/altIdentifier/purl/https:/doi.org/10.1038/s41598-020-76103-4