Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis
Vascular wilt caused by the ascomycete fungal pathogen Fusarium oxysporum f. sp. cubense (Foc) is a major constraint of banana production around the world. The virulent race, namely Tropical Race 4, can infect all Cavendish-type banana plants and is now widespread across the globe, causing devastating losses to global banana production. In this study, we characterized Foc Subtropical Race 4 (STR4) resistance in a wild banana relative which, through estimated genome size and ancestry analysis, was confirmed to be Musa acuminata ssp. malaccensis. Using a self-derived F2 population segregating for STR4 resistance, quantitative trait loci sequencing (QTL-seq) was performed on bulks consisting of resistant and susceptible individuals. Changes in SNP index between the bulks revealed a major QTL located on the distal end of the long arm of chromosome 3. Multiple resistance genes are present in this region. Identification of chromosome regions conferring resistance to Foc can facilitate marker assisted selection in breeding programs and paves the way towards identifying genes underpinning resistance.
id |
dig-cirad-fr-603818 |
---|---|
record_format |
koha |
spelling |
dig-cirad-fr-6038182024-01-29T05:53:18Z http://agritrop.cirad.fr/603818/ http://agritrop.cirad.fr/603818/ Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis. Chen Andrew, Sun Jiaman, Martin Guillaume, Gray Lesley-Ann, Hribova Eva, Christelová Pavla, Yahiaoui Nabila, Rounsley Steve, Lyons Rebecca, Batley Jacqueline, Chen Ning, Hamill Sharon, Rai Subash K., Coin Lachlan, Uwimana Brigitte, D'Hont Angélique, Dolezel Jaroslav, Edwards David P., Swennen Rony, Aitken Elizabeth A. B.. 2023. Pathogens, 12 (2), n.spéc. Current Research on Fusarium:289, 13 p.https://doi.org/10.3390/pathogens12020289 <https://doi.org/10.3390/pathogens12020289> Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis Chen, Andrew Sun, Jiaman Martin, Guillaume Gray, Lesley-Ann Hribova, Eva Christelová, Pavla Yahiaoui, Nabila Rounsley, Steve Lyons, Rebecca Batley, Jacqueline Chen, Ning Hamill, Sharon Rai, Subash K. Coin, Lachlan Uwimana, Brigitte D'Hont, Angélique Dolezel, Jaroslav Edwards, David P. Swennen, Rony Aitken, Elizabeth A. B. eng 2023 Pathogens H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 Vascular wilt caused by the ascomycete fungal pathogen Fusarium oxysporum f. sp. cubense (Foc) is a major constraint of banana production around the world. The virulent race, namely Tropical Race 4, can infect all Cavendish-type banana plants and is now widespread across the globe, causing devastating losses to global banana production. In this study, we characterized Foc Subtropical Race 4 (STR4) resistance in a wild banana relative which, through estimated genome size and ancestry analysis, was confirmed to be Musa acuminata ssp. malaccensis. Using a self-derived F2 population segregating for STR4 resistance, quantitative trait loci sequencing (QTL-seq) was performed on bulks consisting of resistant and susceptible individuals. Changes in SNP index between the bulks revealed a major QTL located on the distal end of the long arm of chromosome 3. Multiple resistance genes are present in this region. Identification of chromosome regions conferring resistance to Foc can facilitate marker assisted selection in breeding programs and paves the way towards identifying genes underpinning resistance. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/603818/1/Chen%20et%20al%202023%20Identification%20of%20a%20major%20QTL-controlling%20resistance%20to%20teh%20subtropical%20Race%204%20of%20Fusarium%20oxysporum%20f.%20sp.%20cubense%20in%20Musa%20acuminata%20ssp%20malaccensis.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.3390/pathogens12020289 10.3390/pathogens12020289 info:eu-repo/semantics/altIdentifier/doi/10.3390/pathogens12020289 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.3390/pathogens12020289 |
institution |
CIRAD FR |
collection |
DSpace |
country |
Francia |
countrycode |
FR |
component |
Bibliográfico |
access |
En linea |
databasecode |
dig-cirad-fr |
tag |
biblioteca |
region |
Europa del Oeste |
libraryname |
Biblioteca del CIRAD Francia |
language |
eng |
topic |
H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 |
spellingShingle |
H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 Chen, Andrew Sun, Jiaman Martin, Guillaume Gray, Lesley-Ann Hribova, Eva Christelová, Pavla Yahiaoui, Nabila Rounsley, Steve Lyons, Rebecca Batley, Jacqueline Chen, Ning Hamill, Sharon Rai, Subash K. Coin, Lachlan Uwimana, Brigitte D'Hont, Angélique Dolezel, Jaroslav Edwards, David P. Swennen, Rony Aitken, Elizabeth A. B. Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
description |
Vascular wilt caused by the ascomycete fungal pathogen Fusarium oxysporum f. sp. cubense (Foc) is a major constraint of banana production around the world. The virulent race, namely Tropical Race 4, can infect all Cavendish-type banana plants and is now widespread across the globe, causing devastating losses to global banana production. In this study, we characterized Foc Subtropical Race 4 (STR4) resistance in a wild banana relative which, through estimated genome size and ancestry analysis, was confirmed to be Musa acuminata ssp. malaccensis. Using a self-derived F2 population segregating for STR4 resistance, quantitative trait loci sequencing (QTL-seq) was performed on bulks consisting of resistant and susceptible individuals. Changes in SNP index between the bulks revealed a major QTL located on the distal end of the long arm of chromosome 3. Multiple resistance genes are present in this region. Identification of chromosome regions conferring resistance to Foc can facilitate marker assisted selection in breeding programs and paves the way towards identifying genes underpinning resistance. |
format |
article |
topic_facet |
H20 - Maladies des plantes H01 - Protection des végétaux - Considérations générales Musa acuminata Musa génome locus des caractères quantitatifs Fusarium oxysporum Musa (bananes) résistance génétique collection de matériel génétique http://aims.fao.org/aos/agrovoc/c_4994 http://aims.fao.org/aos/agrovoc/c_4993 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_16244 http://aims.fao.org/aos/agrovoc/c_29128 http://aims.fao.org/aos/agrovoc/c_35130 http://aims.fao.org/aos/agrovoc/c_36739 |
author |
Chen, Andrew Sun, Jiaman Martin, Guillaume Gray, Lesley-Ann Hribova, Eva Christelová, Pavla Yahiaoui, Nabila Rounsley, Steve Lyons, Rebecca Batley, Jacqueline Chen, Ning Hamill, Sharon Rai, Subash K. Coin, Lachlan Uwimana, Brigitte D'Hont, Angélique Dolezel, Jaroslav Edwards, David P. Swennen, Rony Aitken, Elizabeth A. B. |
author_facet |
Chen, Andrew Sun, Jiaman Martin, Guillaume Gray, Lesley-Ann Hribova, Eva Christelová, Pavla Yahiaoui, Nabila Rounsley, Steve Lyons, Rebecca Batley, Jacqueline Chen, Ning Hamill, Sharon Rai, Subash K. Coin, Lachlan Uwimana, Brigitte D'Hont, Angélique Dolezel, Jaroslav Edwards, David P. Swennen, Rony Aitken, Elizabeth A. B. |
author_sort |
Chen, Andrew |
title |
Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
title_short |
Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
title_full |
Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
title_fullStr |
Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
title_full_unstemmed |
Identification of a major QTL-Controlling resistance to the subtropical race 4 of Fusarium oxysporum f. sp. cubense in Musa acuminata ssp. malaccensis |
title_sort |
identification of a major qtl-controlling resistance to the subtropical race 4 of fusarium oxysporum f. sp. cubense in musa acuminata ssp. malaccensis |
url |
http://agritrop.cirad.fr/603818/ http://agritrop.cirad.fr/603818/1/Chen%20et%20al%202023%20Identification%20of%20a%20major%20QTL-controlling%20resistance%20to%20teh%20subtropical%20Race%204%20of%20Fusarium%20oxysporum%20f.%20sp.%20cubense%20in%20Musa%20acuminata%20ssp%20malaccensis.pdf |
work_keys_str_mv |
AT chenandrew identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT sunjiaman identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT martinguillaume identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT graylesleyann identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT hribovaeva identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT christelovapavla identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT yahiaouinabila identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT rounsleysteve identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT lyonsrebecca identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT batleyjacqueline identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT chenning identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT hamillsharon identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT raisubashk identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT coinlachlan identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT uwimanabrigitte identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT dhontangelique identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT dolezeljaroslav identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT edwardsdavidp identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT swennenrony identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis AT aitkenelizabethab identificationofamajorqtlcontrollingresistancetothesubtropicalrace4offusariumoxysporumfspcubenseinmusaacuminatasspmalaccensis |
_version_ |
1792500501002059776 |