RapGreen, an interactive software and web package to explore and analyze phylogenetic trees
RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees.
Main Authors: | , , , , , , , , |
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Format: | article biblioteca |
Language: | eng |
Subjects: | U60 - Sciences de la vie et de la Terre, U10 - Informatique, mathématiques et statistiques, phylogénie, bioinformatique, application des ordinateurs, traitement des données, phylogénétique, http://aims.fao.org/aos/agrovoc/c_13325, http://aims.fao.org/aos/agrovoc/c_37958, http://aims.fao.org/aos/agrovoc/c_24009, http://aims.fao.org/aos/agrovoc/c_10289, http://aims.fao.org/aos/agrovoc/c_abb380d7, |
Online Access: | http://agritrop.cirad.fr/599620/ http://agritrop.cirad.fr/599620/1/lqab088.pdf |
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dig-cirad-fr-5996202024-04-24T13:05:54Z http://agritrop.cirad.fr/599620/ http://agritrop.cirad.fr/599620/ RapGreen, an interactive software and web package to explore and analyze phylogenetic trees. Dufayard Jean François, Bocs Stéphanie, Guignon Valentin, Larivière Delphine, Louis Alexandra, Oubda Nicolas, Rouard Mathieu, Ruiz Manuel, De Lamotte Frédéric. 2021. NAR Genomics and Bioinformatics, 3 (3):lqab088, 6 p.https://doi.org/10.1093/nargab/lqab088 <https://doi.org/10.1093/nargab/lqab088> RapGreen, an interactive software and web package to explore and analyze phylogenetic trees Dufayard, Jean François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruiz, Manuel De Lamotte, Frédéric eng 2021 NAR Genomics and Bioinformatics U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/599620/1/lqab088.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1093/nargab/lqab088 10.1093/nargab/lqab088 info:eu-repo/semantics/altIdentifier/doi/10.1093/nargab/lqab088 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1093/nargab/lqab088 info:eu-repo/semantics/reference/purl/https://github.com/SouthGreenPlatform/rap-green/wiki/Examples-of-installed-services |
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U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 |
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U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 Dufayard, Jean François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruiz, Manuel De Lamotte, Frédéric RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
description |
RapGreen is a modular software package targeted at scientists handling large datasets for phylogenetic analysis. Its primary function is the graphical visualization and exploration of large trees. In addition, RapGreen offers a tree pattern search function to seek evolutionary scenarios among large collections of phylogenetic trees. Other functionalities include tree reconciliation with a given species tree: the detection of duplication or loss events during evolution and tree rooting. Last but not least, RapGreen features the ability to integrate heterogeneous data while visualizing and otherwise analyzing phylogenetic trees. |
format |
article |
topic_facet |
U60 - Sciences de la vie et de la Terre U10 - Informatique, mathématiques et statistiques phylogénie bioinformatique application des ordinateurs traitement des données phylogénétique http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_37958 http://aims.fao.org/aos/agrovoc/c_24009 http://aims.fao.org/aos/agrovoc/c_10289 http://aims.fao.org/aos/agrovoc/c_abb380d7 |
author |
Dufayard, Jean François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruiz, Manuel De Lamotte, Frédéric |
author_facet |
Dufayard, Jean François Bocs, Stéphanie Guignon, Valentin Larivière, Delphine Louis, Alexandra Oubda, Nicolas Rouard, Mathieu Ruiz, Manuel De Lamotte, Frédéric |
author_sort |
Dufayard, Jean François |
title |
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
title_short |
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
title_full |
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
title_fullStr |
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
title_full_unstemmed |
RapGreen, an interactive software and web package to explore and analyze phylogenetic trees |
title_sort |
rapgreen, an interactive software and web package to explore and analyze phylogenetic trees |
url |
http://agritrop.cirad.fr/599620/ http://agritrop.cirad.fr/599620/1/lqab088.pdf |
work_keys_str_mv |
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_version_ |
1798165068732432384 |