The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships
The chloroplast (cp) is an essential organelle in higher plants. The genes of the plastome are well suited to infer phylogenetic relationships among taxa. In this study, we report the assembly of the cp genome of Artocarpus altilis and its phylogeny among species from Moraceae family. The cp genome of A. altilis was 160,822 base pair (bp) in length, comprising one large single-copy region of 88,692 bp, one small single-copy region of 19,290 bp, and a pair of inverted repeat regions (IRs) of 26,420 bp. A total of 113 different genes were predicted, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis of 19 species belonging to the Moraceae family confirmed the phylogenetic proximity of the genus Artocarpus and Morus and the genetic similarity of A. camansi and A. altilis.
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Format: | article biblioteca |
Language: | eng |
Subjects: | F30 - Génétique et amélioration des plantes, Artocarpus altilis, phylogénie, chloroplaste, phytogénétique, génome, plaste, http://aims.fao.org/aos/agrovoc/c_646, http://aims.fao.org/aos/agrovoc/c_13325, http://aims.fao.org/aos/agrovoc/c_9824, http://aims.fao.org/aos/agrovoc/c_49985, http://aims.fao.org/aos/agrovoc/c_3224, http://aims.fao.org/aos/agrovoc/c_5999, |
Online Access: | http://agritrop.cirad.fr/598920/ http://agritrop.cirad.fr/598920/1/The%20complete%20chloroplast%20genome%20of%20Artocarpus%20altilis%20Moraceae%20and%20phylogenetic%20relationships.pdf |
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dig-cirad-fr-5989202024-01-29T03:41:32Z http://agritrop.cirad.fr/598920/ http://agritrop.cirad.fr/598920/ The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships. Borges de Souza Ueric José, dos Santos Raíssa Nunes, de Araújo Filho Renisson Neponuceno, dos Santos Gil Rodrigues, Almeida Sarmento Renato, De Bellis Fabien, Campos Fabrício Souza. 2021. Mitochondrial DNA. Part B. Resources, 6 (8) : 2291-2293.https://doi.org/10.1080/23802359.2021.1945504 <https://doi.org/10.1080/23802359.2021.1945504> The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships Borges de Souza, Ueric José dos Santos, Raíssa Nunes de Araújo Filho, Renisson Neponuceno dos Santos, Gil Rodrigues Almeida Sarmento, Renato De Bellis, Fabien Campos, Fabrício Souza eng 2021 Mitochondrial DNA. Part B. Resources F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 The chloroplast (cp) is an essential organelle in higher plants. The genes of the plastome are well suited to infer phylogenetic relationships among taxa. In this study, we report the assembly of the cp genome of Artocarpus altilis and its phylogeny among species from Moraceae family. The cp genome of A. altilis was 160,822 base pair (bp) in length, comprising one large single-copy region of 88,692 bp, one small single-copy region of 19,290 bp, and a pair of inverted repeat regions (IRs) of 26,420 bp. A total of 113 different genes were predicted, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis of 19 species belonging to the Moraceae family confirmed the phylogenetic proximity of the genus Artocarpus and Morus and the genetic similarity of A. camansi and A. altilis. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/598920/1/The%20complete%20chloroplast%20genome%20of%20Artocarpus%20altilis%20Moraceae%20and%20phylogenetic%20relationships.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1080/23802359.2021.1945504 10.1080/23802359.2021.1945504 info:eu-repo/semantics/altIdentifier/doi/10.1080/23802359.2021.1945504 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1080/23802359.2021.1945504 info:eu-repo/semantics/dataset/purl/https://www.ncbi.nlm.nih.gov/search/all/?term=MW367444 info:eu-repo/semantics/dataset/purl/https://www.ncbi.nlm.nih.gov/search/all/?term=PRJNA312880 |
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F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 |
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F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 Borges de Souza, Ueric José dos Santos, Raíssa Nunes de Araújo Filho, Renisson Neponuceno dos Santos, Gil Rodrigues Almeida Sarmento, Renato De Bellis, Fabien Campos, Fabrício Souza The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
description |
The chloroplast (cp) is an essential organelle in higher plants. The genes of the plastome are well suited to infer phylogenetic relationships among taxa. In this study, we report the assembly of the cp genome of Artocarpus altilis and its phylogeny among species from Moraceae family. The cp genome of A. altilis was 160,822 base pair (bp) in length, comprising one large single-copy region of 88,692 bp, one small single-copy region of 19,290 bp, and a pair of inverted repeat regions (IRs) of 26,420 bp. A total of 113 different genes were predicted, including 79 protein-coding genes, 30 tRNA genes, and four rRNA genes. The phylogenetic analysis of 19 species belonging to the Moraceae family confirmed the phylogenetic proximity of the genus Artocarpus and Morus and the genetic similarity of A. camansi and A. altilis. |
format |
article |
topic_facet |
F30 - Génétique et amélioration des plantes Artocarpus altilis phylogénie chloroplaste phytogénétique génome plaste http://aims.fao.org/aos/agrovoc/c_646 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_9824 http://aims.fao.org/aos/agrovoc/c_49985 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_5999 |
author |
Borges de Souza, Ueric José dos Santos, Raíssa Nunes de Araújo Filho, Renisson Neponuceno dos Santos, Gil Rodrigues Almeida Sarmento, Renato De Bellis, Fabien Campos, Fabrício Souza |
author_facet |
Borges de Souza, Ueric José dos Santos, Raíssa Nunes de Araújo Filho, Renisson Neponuceno dos Santos, Gil Rodrigues Almeida Sarmento, Renato De Bellis, Fabien Campos, Fabrício Souza |
author_sort |
Borges de Souza, Ueric José |
title |
The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
title_short |
The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
title_full |
The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
title_fullStr |
The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
title_full_unstemmed |
The complete chloroplast genome of Artocarpus altilis (Moraceae) and phylogenetic relationships |
title_sort |
complete chloroplast genome of artocarpus altilis (moraceae) and phylogenetic relationships |
url |
http://agritrop.cirad.fr/598920/ http://agritrop.cirad.fr/598920/1/The%20complete%20chloroplast%20genome%20of%20Artocarpus%20altilis%20Moraceae%20and%20phylogenetic%20relationships.pdf |
work_keys_str_mv |
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