Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus
A novel geminivirus was identified in France and Spain in asymptomatic plants of white clover (Trifolium repens) and shrub medick (Medicago arborea). Its genome has the hallmarks of a capulavirus, and its relationship to other capulaviruses was confirmed by phylogenetic analysis. White clover isolates formed a tight cluster in the phylogenetic tree, while shrub medick isolates formed two distinct, more divergent groups with sequence identity values close to the species cutoff. These three groups have likely participated in recombination events involving alfalfa leaf curl virus and French bean severe leaf curl virus. The name "trifolium virus 1" (TrV1) is proposed for this new Capulavirus. Three TrV1 genotypes (TrV1-A, TrV1-B, and TrV1-C) were clearly distinguished.
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Format: | article biblioteca |
Language: | eng |
Subjects: | H20 - Maladies des plantes, Geminiviridae, génome, identification, séquence nucléotidique, indexage des virus des plantes, Trifolium repens, Medicago, Medicago arborea, génome viral, http://aims.fao.org/aos/agrovoc/c_32859, http://aims.fao.org/aos/agrovoc/c_3224, http://aims.fao.org/aos/agrovoc/c_3791, http://aims.fao.org/aos/agrovoc/c_27583, http://aims.fao.org/aos/agrovoc/c_27034, http://aims.fao.org/aos/agrovoc/c_7918, http://aims.fao.org/aos/agrovoc/c_4687, http://aims.fao.org/aos/agrovoc/c_948ba075, http://aims.fao.org/aos/agrovoc/c_6f005d52, http://aims.fao.org/aos/agrovoc/c_3081, http://aims.fao.org/aos/agrovoc/c_7273, |
Online Access: | http://agritrop.cirad.fr/598791/ http://agritrop.cirad.fr/598791/8/598791.pdf |
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dig-cirad-fr-5987912024-01-29T03:38:36Z http://agritrop.cirad.fr/598791/ http://agritrop.cirad.fr/598791/ Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus. Ma Yuxin, Svanella‑Dumas Laurence, Julian Charlotte, Galzi Serge, Fernandez Emmanuel, Yvon Michel, Pirolles Elodie, Lefebvre Marie, Filloux Denis, Roumagnac Philippe, Candresse Thierry. 2021. Archives of Virology, 166 : 2573-2578.https://doi.org/10.1007/s00705-021-05135-6 <https://doi.org/10.1007/s00705-021-05135-6> Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus Ma, Yuxin Svanella‑Dumas, Laurence Julian, Charlotte Galzi, Serge Fernandez, Emmanuel Yvon, Michel Pirolles, Elodie Lefebvre, Marie Filloux, Denis Roumagnac, Philippe Candresse, Thierry eng 2021 Archives of Virology H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 France Espagne http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 A novel geminivirus was identified in France and Spain in asymptomatic plants of white clover (Trifolium repens) and shrub medick (Medicago arborea). Its genome has the hallmarks of a capulavirus, and its relationship to other capulaviruses was confirmed by phylogenetic analysis. White clover isolates formed a tight cluster in the phylogenetic tree, while shrub medick isolates formed two distinct, more divergent groups with sequence identity values close to the species cutoff. These three groups have likely participated in recombination events involving alfalfa leaf curl virus and French bean severe leaf curl virus. The name "trifolium virus 1" (TrV1) is proposed for this new Capulavirus. Three TrV1 genotypes (TrV1-A, TrV1-B, and TrV1-C) were clearly distinguished. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/598791/8/598791.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s00705-021-05135-6 10.1007/s00705-021-05135-6 info:eu-repo/semantics/altIdentifier/doi/10.1007/s00705-021-05135-6 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00705-021-05135-6 info:eu-repo/semantics/dataset/purl/https://doi.org/10.15454/1.5572369328961167E12 |
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H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 |
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H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 Ma, Yuxin Svanella‑Dumas, Laurence Julian, Charlotte Galzi, Serge Fernandez, Emmanuel Yvon, Michel Pirolles, Elodie Lefebvre, Marie Filloux, Denis Roumagnac, Philippe Candresse, Thierry Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
description |
A novel geminivirus was identified in France and Spain in asymptomatic plants of white clover (Trifolium repens) and shrub medick (Medicago arborea). Its genome has the hallmarks of a capulavirus, and its relationship to other capulaviruses was confirmed by phylogenetic analysis. White clover isolates formed a tight cluster in the phylogenetic tree, while shrub medick isolates formed two distinct, more divergent groups with sequence identity values close to the species cutoff. These three groups have likely participated in recombination events involving alfalfa leaf curl virus and French bean severe leaf curl virus. The name "trifolium virus 1" (TrV1) is proposed for this new Capulavirus. Three TrV1 genotypes (TrV1-A, TrV1-B, and TrV1-C) were clearly distinguished. |
format |
article |
topic_facet |
H20 - Maladies des plantes Geminiviridae génome identification séquence nucléotidique indexage des virus des plantes Trifolium repens Medicago Medicago arborea génome viral http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_27034 http://aims.fao.org/aos/agrovoc/c_7918 http://aims.fao.org/aos/agrovoc/c_4687 http://aims.fao.org/aos/agrovoc/c_948ba075 http://aims.fao.org/aos/agrovoc/c_6f005d52 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_7273 |
author |
Ma, Yuxin Svanella‑Dumas, Laurence Julian, Charlotte Galzi, Serge Fernandez, Emmanuel Yvon, Michel Pirolles, Elodie Lefebvre, Marie Filloux, Denis Roumagnac, Philippe Candresse, Thierry |
author_facet |
Ma, Yuxin Svanella‑Dumas, Laurence Julian, Charlotte Galzi, Serge Fernandez, Emmanuel Yvon, Michel Pirolles, Elodie Lefebvre, Marie Filloux, Denis Roumagnac, Philippe Candresse, Thierry |
author_sort |
Ma, Yuxin |
title |
Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
title_short |
Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
title_full |
Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
title_fullStr |
Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
title_full_unstemmed |
Genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
title_sort |
genome characterization and diversity of trifolium virus 1: identification of a novel legume-infecting capulavirus |
url |
http://agritrop.cirad.fr/598791/ http://agritrop.cirad.fr/598791/8/598791.pdf |
work_keys_str_mv |
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_version_ |
1792500194054504448 |