Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors
Three Gossypium species have been used to breed cotton as they vary in their fiber production and resistance to stresses. Transcription factors (TFs) mostly are present in different copies or isoforms by which they conduct their regulation. Their copy number can determine organism behavior to a cue. Simple sequence repeats (SSRs) are one of the most informative and versatile molecular markers. Transcription factors of three Gossypium species were compared in silico. Seventy eight percent of TFs were common between the three species. Single copy for each species were 6057 TF. Gossypium hirsutum and G. raimondii shared the most common interspecific TF. Gossypium arboreum species-specific TF were the least. MYB TF family with its subfamilies is the most abundant followed by bHLH and AP2/ERF family. Gossypium hirsutum generally possesses more TF copies compared to other two species. The 2109 single-copy clusters indicate that G. hirsutum has received one copy from only one parent. The five most abundant SSR markers of TF were dinucleotides AT, TA, TC, CT and TG belonging to G. raimondii. For G. arboreum and G. hirsutum they were trinucleotides CAA, CGA, TGA, GAA (CAT: G. hirsutum) and TCA. The findings suggest that there is regulatory difference between the three Gossypium species for fiber production and insect attack response. The differences may be due to some adaptive deletion events during speciation of G. hirsutum from its parents G. arboreum and G. raimondii.
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Format: | article biblioteca |
Language: | eng |
Subjects: | F30 - Génétique et amélioration des plantes, Gossypium, facteur de transcription, marqueur génétique, polyploïdie, diploïdie, Gossypium arboreum, Gossypium hirsutum, Gossypium raimondii, http://aims.fao.org/aos/agrovoc/c_3335, http://aims.fao.org/aos/agrovoc/c_35345, http://aims.fao.org/aos/agrovoc/c_24030, http://aims.fao.org/aos/agrovoc/c_6094, http://aims.fao.org/aos/agrovoc/c_2313, http://aims.fao.org/aos/agrovoc/c_3336, http://aims.fao.org/aos/agrovoc/c_3339, http://aims.fao.org/aos/agrovoc/c_23926, |
Online Access: | http://agritrop.cirad.fr/595414/ http://agritrop.cirad.fr/595414/1/Jazayeri2020transcriptFactMolMkAsymmContribCotton.pdf |
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dig-cirad-fr-5954142024-01-29T02:41:44Z http://agritrop.cirad.fr/595414/ http://agritrop.cirad.fr/595414/ Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors. Jazayeri Seyed Mehdi, Villamar-Torres Ronald Oswaldo, Zambrano-Vega Cristian, García Cruzaty Luz Cecilia, Oviedo-Bayas Byron, Do Amaral Santos Milena, Maddela Naga Raju, Ghafoor Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed, Viot Christopher. 2020. Plant Breeding, 79 (1), 17 p.https://doi.org/10.1590/1678-4499.20190161 <https://doi.org/10.1590/1678-4499.20190161> Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors Jazayeri, Seyed Mehdi Villamar-Torres, Ronald Oswaldo Zambrano-Vega, Cristian García Cruzaty, Luz Cecilia Oviedo-Bayas, Byron Do Amaral Santos, Milena Maddela, Naga Raju Ghafoor, Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed Viot, Christopher eng 2020 Plant Breeding F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 Three Gossypium species have been used to breed cotton as they vary in their fiber production and resistance to stresses. Transcription factors (TFs) mostly are present in different copies or isoforms by which they conduct their regulation. Their copy number can determine organism behavior to a cue. Simple sequence repeats (SSRs) are one of the most informative and versatile molecular markers. Transcription factors of three Gossypium species were compared in silico. Seventy eight percent of TFs were common between the three species. Single copy for each species were 6057 TF. Gossypium hirsutum and G. raimondii shared the most common interspecific TF. Gossypium arboreum species-specific TF were the least. MYB TF family with its subfamilies is the most abundant followed by bHLH and AP2/ERF family. Gossypium hirsutum generally possesses more TF copies compared to other two species. The 2109 single-copy clusters indicate that G. hirsutum has received one copy from only one parent. The five most abundant SSR markers of TF were dinucleotides AT, TA, TC, CT and TG belonging to G. raimondii. For G. arboreum and G. hirsutum they were trinucleotides CAA, CGA, TGA, GAA (CAT: G. hirsutum) and TCA. The findings suggest that there is regulatory difference between the three Gossypium species for fiber production and insect attack response. The differences may be due to some adaptive deletion events during speciation of G. hirsutum from its parents G. arboreum and G. raimondii. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/595414/1/Jazayeri2020transcriptFactMolMkAsymmContribCotton.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1590/1678-4499.20190161 10.1590/1678-4499.20190161 info:eu-repo/semantics/altIdentifier/doi/10.1590/1678-4499.20190161 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1590/1678-4499.20190161 |
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F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 |
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F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 Jazayeri, Seyed Mehdi Villamar-Torres, Ronald Oswaldo Zambrano-Vega, Cristian García Cruzaty, Luz Cecilia Oviedo-Bayas, Byron Do Amaral Santos, Milena Maddela, Naga Raju Ghafoor, Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed Viot, Christopher Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
description |
Three Gossypium species have been used to breed cotton as they vary in their fiber production and resistance to stresses. Transcription factors (TFs) mostly are present in different copies or isoforms by which they conduct their regulation. Their copy number can determine organism behavior to a cue. Simple sequence repeats (SSRs) are one of the most informative and versatile molecular markers. Transcription factors of three Gossypium species were compared in silico. Seventy eight percent of TFs were common between the three species. Single copy for each species were 6057 TF. Gossypium hirsutum and G. raimondii shared the most common interspecific TF. Gossypium arboreum species-specific TF were the least. MYB TF family with its subfamilies is the most abundant followed by bHLH and AP2/ERF family. Gossypium hirsutum generally possesses more TF copies compared to other two species. The 2109 single-copy clusters indicate that G. hirsutum has received one copy from only one parent. The five most abundant SSR markers of TF were dinucleotides AT, TA, TC, CT and TG belonging to G. raimondii. For G. arboreum and G. hirsutum they were trinucleotides CAA, CGA, TGA, GAA (CAT: G. hirsutum) and TCA. The findings suggest that there is regulatory difference between the three Gossypium species for fiber production and insect attack response. The differences may be due to some adaptive deletion events during speciation of G. hirsutum from its parents G. arboreum and G. raimondii. |
format |
article |
topic_facet |
F30 - Génétique et amélioration des plantes Gossypium facteur de transcription marqueur génétique polyploïdie diploïdie Gossypium arboreum Gossypium hirsutum Gossypium raimondii http://aims.fao.org/aos/agrovoc/c_3335 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_24030 http://aims.fao.org/aos/agrovoc/c_6094 http://aims.fao.org/aos/agrovoc/c_2313 http://aims.fao.org/aos/agrovoc/c_3336 http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_23926 |
author |
Jazayeri, Seyed Mehdi Villamar-Torres, Ronald Oswaldo Zambrano-Vega, Cristian García Cruzaty, Luz Cecilia Oviedo-Bayas, Byron Do Amaral Santos, Milena Maddela, Naga Raju Ghafoor, Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed Viot, Christopher |
author_facet |
Jazayeri, Seyed Mehdi Villamar-Torres, Ronald Oswaldo Zambrano-Vega, Cristian García Cruzaty, Luz Cecilia Oviedo-Bayas, Byron Do Amaral Santos, Milena Maddela, Naga Raju Ghafoor, Seyed Mohammad Hossein Seyed Mohammad Hossein Ale Seyed Viot, Christopher |
author_sort |
Jazayeri, Seyed Mehdi |
title |
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
title_short |
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
title_full |
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
title_fullStr |
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
title_full_unstemmed |
Transcription factors and molecular markers revealed asymmetric contributions between allotetraploid Upland cotton and its two diploid ancestors |
title_sort |
transcription factors and molecular markers revealed asymmetric contributions between allotetraploid upland cotton and its two diploid ancestors |
url |
http://agritrop.cirad.fr/595414/ http://agritrop.cirad.fr/595414/1/Jazayeri2020transcriptFactMolMkAsymmContribCotton.pdf |
work_keys_str_mv |
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