Species distribution modeling based on the automated identification of citizen observations

Premise of the Study: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. Methods: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens through a popular mobile application. We compared species distribution modeling of invasive alien plants based on these data to inventories made by experts. Results: The trained models have a reasonable predictive effectiveness for some species, but they are biased by the massive presence of cultivated specimens. Discussion: The method proposed here allows for fine‐grained and regular monitoring of some species of interest based on opportunistic observations. More in‐depth investigation of the typology of the observations and the sampling bias should help improve the approach in the future.

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Main Authors: Botella, Christophe, Joly, Alexis, Bonnet, Pierre, Monestiez, Pascal, Munoz, François
Format: article biblioteca
Language:eng
Subjects:F40 - Écologie végétale, F70 - Taxonomie végétale et phytogéographie, C30 - Documentation et information, C20 - Vulgarisation,
Online Access:http://agritrop.cirad.fr/587696/
http://agritrop.cirad.fr/587696/1/aps3.1029.pdf
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spelling dig-cirad-fr-5876962021-11-09T09:38:24Z http://agritrop.cirad.fr/587696/ http://agritrop.cirad.fr/587696/ Species distribution modeling based on the automated identification of citizen observations. Botella Christophe, Joly Alexis, Bonnet Pierre, Monestiez Pascal, Munoz François. 2018. Applications in Plant Sciences, 6 (2), n.spéc. Green Digitization: Online Botanical Collections Data Answering Real-World Questions:e1029, 11 p.https://doi.org/10.1002/aps3.1029 <https://doi.org/10.1002/aps3.1029> Researchers Species distribution modeling based on the automated identification of citizen observations Botella, Christophe Joly, Alexis Bonnet, Pierre Monestiez, Pascal Munoz, François eng 2018 Applications in Plant Sciences F40 - Écologie végétale F70 - Taxonomie végétale et phytogéographie C30 - Documentation et information C20 - Vulgarisation Premise of the Study: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. Methods: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens through a popular mobile application. We compared species distribution modeling of invasive alien plants based on these data to inventories made by experts. Results: The trained models have a reasonable predictive effectiveness for some species, but they are biased by the massive presence of cultivated specimens. Discussion: The method proposed here allows for fine‐grained and regular monitoring of some species of interest based on opportunistic observations. More in‐depth investigation of the typology of the observations and the sampling bias should help improve the approach in the future. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/587696/1/aps3.1029.pdf text Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1002/aps3.1029 10.1002/aps3.1029 info:eu-repo/semantics/altIdentifier/doi/10.1002/aps3.1029 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1002/aps3.1029
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic F40 - Écologie végétale
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information
C20 - Vulgarisation
F40 - Écologie végétale
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information
C20 - Vulgarisation
spellingShingle F40 - Écologie végétale
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information
C20 - Vulgarisation
F40 - Écologie végétale
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information
C20 - Vulgarisation
Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
Species distribution modeling based on the automated identification of citizen observations
description Premise of the Study: A species distribution model computed with automatically identified plant observations was developed and evaluated to contribute to future ecological studies. Methods: We used deep learning techniques to automatically identify opportunistic plant observations made by citizens through a popular mobile application. We compared species distribution modeling of invasive alien plants based on these data to inventories made by experts. Results: The trained models have a reasonable predictive effectiveness for some species, but they are biased by the massive presence of cultivated specimens. Discussion: The method proposed here allows for fine‐grained and regular monitoring of some species of interest based on opportunistic observations. More in‐depth investigation of the typology of the observations and the sampling bias should help improve the approach in the future.
format article
topic_facet F40 - Écologie végétale
F70 - Taxonomie végétale et phytogéographie
C30 - Documentation et information
C20 - Vulgarisation
author Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
author_facet Botella, Christophe
Joly, Alexis
Bonnet, Pierre
Monestiez, Pascal
Munoz, François
author_sort Botella, Christophe
title Species distribution modeling based on the automated identification of citizen observations
title_short Species distribution modeling based on the automated identification of citizen observations
title_full Species distribution modeling based on the automated identification of citizen observations
title_fullStr Species distribution modeling based on the automated identification of citizen observations
title_full_unstemmed Species distribution modeling based on the automated identification of citizen observations
title_sort species distribution modeling based on the automated identification of citizen observations
url http://agritrop.cirad.fr/587696/
http://agritrop.cirad.fr/587696/1/aps3.1029.pdf
work_keys_str_mv AT botellachristophe speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT jolyalexis speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT bonnetpierre speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT monestiezpascal speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
AT munozfrancois speciesdistributionmodelingbasedontheautomatedidentificationofcitizenobservations
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