Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties

Better defining niches for the photoperiod sensitive sorghum (Sorghum bicolor L. Moench) varieties of West Africa into the local cropping system might help to improve the resilience of food production in the region. In particular, crop models are key tools to assess the growth and development of such varieties against climate and soil variability. In this study, we compared the performance of three process-based crop models (APSIM, DSSAT and Samara) for prediction of diverse sorghum germplasm having widely varying photoperiod sensitivity (PPS) using detailed growth and development observations from field trials conducted in West Africa semi-arid region. Our results confirmed the capability of each selected model to reproduce growth and development for varieties of diverse sensitivities to photoperiod. Simulated phenology and morphology organs during calibration and validation were within the closet range of measured values with the evaluation of model error statistics (RMSE and R2). With the exception of highly sensitive variety (IS15401), APSIM and Samara estimates indicate the lowest value of RMSE (<7days) against the observed values for phenology events (flowering and maturity) compared to DSSAT model. Across the varieties, there was over-estimation for simulated leaf area index (LAI) while total leaf number (TLN) fitted well with the observed values. Samara estimates were found to be the closet with the lowest RMSE values (<3 leaves for TLN and <1.0 m2/m2 for LAI) followed by DSSAT and APSIM respectively. Prediction of grain yield and biomass was less accurate for both calibration and validation. The predictions using APSIM were found to be closest to the observed followed by DSSAT and Samara models respectively. Based on detailed field observations, this study showed that crop models captured well the phenology and leaf development of the photoperiod sensitive (PPS) varieties of West Africa, but failed to estimate accurately partitioning of assimilates during grain filling. APSIM and SAMARA as more mechanistic crop models, have a higher sensitivity of the adjustment of key parameters, notably the specific leaf area for APSIM in low PPS varieties, while SAMARA shows a higher response to parameters changes for high PPS varieties.

Saved in:
Bibliographic Details
Main Authors: Akinseye, Folorunso M., Adam, Myriam, Agele, Samuel O., Hoffmann, Munir P., Traoré, P.C.S., Whitbread, Anthony M.
Format: article biblioteca
Language:eng
Subjects:F30 - Génétique et amélioration des plantes, F60 - Physiologie et biochimie végétale, U10 - Informatique, mathématiques et statistiques, Sorghum bicolor, modélisation des cultures, modèle, photopériodicité, phénologie, morphologie végétale, facteur climatique, http://aims.fao.org/aos/agrovoc/c_7247, http://aims.fao.org/aos/agrovoc/c_9000024, http://aims.fao.org/aos/agrovoc/c_4881, http://aims.fao.org/aos/agrovoc/c_5809, http://aims.fao.org/aos/agrovoc/c_5774, http://aims.fao.org/aos/agrovoc/c_13434, http://aims.fao.org/aos/agrovoc/c_29554, http://aims.fao.org/aos/agrovoc/c_8355, http://aims.fao.org/aos/agrovoc/c_4540, http://aims.fao.org/aos/agrovoc/c_8081, http://aims.fao.org/aos/agrovoc/c_3081,
Online Access:http://agritrop.cirad.fr/582341/
http://agritrop.cirad.fr/582341/1/Akinseye_etal_2017.pdf
Tags: Add Tag
No Tags, Be the first to tag this record!
id dig-cirad-fr-582341
record_format koha
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
U10 - Informatique, mathématiques et statistiques
Sorghum bicolor
modélisation des cultures
modèle
photopériodicité
phénologie
morphologie végétale
facteur climatique
http://aims.fao.org/aos/agrovoc/c_7247
http://aims.fao.org/aos/agrovoc/c_9000024
http://aims.fao.org/aos/agrovoc/c_4881
http://aims.fao.org/aos/agrovoc/c_5809
http://aims.fao.org/aos/agrovoc/c_5774
http://aims.fao.org/aos/agrovoc/c_13434
http://aims.fao.org/aos/agrovoc/c_29554
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_4540
http://aims.fao.org/aos/agrovoc/c_8081
http://aims.fao.org/aos/agrovoc/c_3081
F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
U10 - Informatique, mathématiques et statistiques
Sorghum bicolor
modélisation des cultures
modèle
photopériodicité
phénologie
morphologie végétale
facteur climatique
http://aims.fao.org/aos/agrovoc/c_7247
http://aims.fao.org/aos/agrovoc/c_9000024
http://aims.fao.org/aos/agrovoc/c_4881
http://aims.fao.org/aos/agrovoc/c_5809
http://aims.fao.org/aos/agrovoc/c_5774
http://aims.fao.org/aos/agrovoc/c_13434
http://aims.fao.org/aos/agrovoc/c_29554
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_4540
http://aims.fao.org/aos/agrovoc/c_8081
http://aims.fao.org/aos/agrovoc/c_3081
spellingShingle F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
U10 - Informatique, mathématiques et statistiques
Sorghum bicolor
modélisation des cultures
modèle
photopériodicité
phénologie
morphologie végétale
facteur climatique
http://aims.fao.org/aos/agrovoc/c_7247
http://aims.fao.org/aos/agrovoc/c_9000024
http://aims.fao.org/aos/agrovoc/c_4881
http://aims.fao.org/aos/agrovoc/c_5809
http://aims.fao.org/aos/agrovoc/c_5774
http://aims.fao.org/aos/agrovoc/c_13434
http://aims.fao.org/aos/agrovoc/c_29554
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_4540
http://aims.fao.org/aos/agrovoc/c_8081
http://aims.fao.org/aos/agrovoc/c_3081
F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
U10 - Informatique, mathématiques et statistiques
Sorghum bicolor
modélisation des cultures
modèle
photopériodicité
phénologie
morphologie végétale
facteur climatique
http://aims.fao.org/aos/agrovoc/c_7247
http://aims.fao.org/aos/agrovoc/c_9000024
http://aims.fao.org/aos/agrovoc/c_4881
http://aims.fao.org/aos/agrovoc/c_5809
http://aims.fao.org/aos/agrovoc/c_5774
http://aims.fao.org/aos/agrovoc/c_13434
http://aims.fao.org/aos/agrovoc/c_29554
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_4540
http://aims.fao.org/aos/agrovoc/c_8081
http://aims.fao.org/aos/agrovoc/c_3081
Akinseye, Folorunso M.
Adam, Myriam
Agele, Samuel O.
Hoffmann, Munir P.
Traoré, P.C.S.
Whitbread, Anthony M.
Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
description Better defining niches for the photoperiod sensitive sorghum (Sorghum bicolor L. Moench) varieties of West Africa into the local cropping system might help to improve the resilience of food production in the region. In particular, crop models are key tools to assess the growth and development of such varieties against climate and soil variability. In this study, we compared the performance of three process-based crop models (APSIM, DSSAT and Samara) for prediction of diverse sorghum germplasm having widely varying photoperiod sensitivity (PPS) using detailed growth and development observations from field trials conducted in West Africa semi-arid region. Our results confirmed the capability of each selected model to reproduce growth and development for varieties of diverse sensitivities to photoperiod. Simulated phenology and morphology organs during calibration and validation were within the closet range of measured values with the evaluation of model error statistics (RMSE and R2). With the exception of highly sensitive variety (IS15401), APSIM and Samara estimates indicate the lowest value of RMSE (<7days) against the observed values for phenology events (flowering and maturity) compared to DSSAT model. Across the varieties, there was over-estimation for simulated leaf area index (LAI) while total leaf number (TLN) fitted well with the observed values. Samara estimates were found to be the closet with the lowest RMSE values (<3 leaves for TLN and <1.0 m2/m2 for LAI) followed by DSSAT and APSIM respectively. Prediction of grain yield and biomass was less accurate for both calibration and validation. The predictions using APSIM were found to be closest to the observed followed by DSSAT and Samara models respectively. Based on detailed field observations, this study showed that crop models captured well the phenology and leaf development of the photoperiod sensitive (PPS) varieties of West Africa, but failed to estimate accurately partitioning of assimilates during grain filling. APSIM and SAMARA as more mechanistic crop models, have a higher sensitivity of the adjustment of key parameters, notably the specific leaf area for APSIM in low PPS varieties, while SAMARA shows a higher response to parameters changes for high PPS varieties.
format article
topic_facet F30 - Génétique et amélioration des plantes
F60 - Physiologie et biochimie végétale
U10 - Informatique, mathématiques et statistiques
Sorghum bicolor
modélisation des cultures
modèle
photopériodicité
phénologie
morphologie végétale
facteur climatique
http://aims.fao.org/aos/agrovoc/c_7247
http://aims.fao.org/aos/agrovoc/c_9000024
http://aims.fao.org/aos/agrovoc/c_4881
http://aims.fao.org/aos/agrovoc/c_5809
http://aims.fao.org/aos/agrovoc/c_5774
http://aims.fao.org/aos/agrovoc/c_13434
http://aims.fao.org/aos/agrovoc/c_29554
http://aims.fao.org/aos/agrovoc/c_8355
http://aims.fao.org/aos/agrovoc/c_4540
http://aims.fao.org/aos/agrovoc/c_8081
http://aims.fao.org/aos/agrovoc/c_3081
author Akinseye, Folorunso M.
Adam, Myriam
Agele, Samuel O.
Hoffmann, Munir P.
Traoré, P.C.S.
Whitbread, Anthony M.
author_facet Akinseye, Folorunso M.
Adam, Myriam
Agele, Samuel O.
Hoffmann, Munir P.
Traoré, P.C.S.
Whitbread, Anthony M.
author_sort Akinseye, Folorunso M.
title Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
title_short Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
title_full Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
title_fullStr Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
title_full_unstemmed Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties
title_sort assessing crop model improvements through comparison of sorghum (sorghum bicolor l. moench) simulation models: a case study of west african varieties
url http://agritrop.cirad.fr/582341/
http://agritrop.cirad.fr/582341/1/Akinseye_etal_2017.pdf
work_keys_str_mv AT akinseyefolorunsom assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
AT adammyriam assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
AT agelesamuelo assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
AT hoffmannmunirp assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
AT traorepcs assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
AT whitbreadanthonym assessingcropmodelimprovementsthroughcomparisonofsorghumsorghumbicolorlmoenchsimulationmodelsacasestudyofwestafricanvarieties
_version_ 1792499146750427136
spelling dig-cirad-fr-5823412024-01-28T23:49:23Z http://agritrop.cirad.fr/582341/ http://agritrop.cirad.fr/582341/ Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties. Akinseye Folorunso M., Adam Myriam, Agele Samuel O., Hoffmann Munir P., Traoré P.C.S., Whitbread Anthony M.. 2017. Field Crops Research, 201 : 19-31.https://doi.org/10.1016/j.fcr.2016.10.015 <https://doi.org/10.1016/j.fcr.2016.10.015> Assessing crop model improvements through comparison of sorghum (Sorghum bicolor L. Moench) simulation models: A case study of West African varieties Akinseye, Folorunso M. Adam, Myriam Agele, Samuel O. Hoffmann, Munir P. Traoré, P.C.S. Whitbread, Anthony M. eng 2017 Field Crops Research F30 - Génétique et amélioration des plantes F60 - Physiologie et biochimie végétale U10 - Informatique, mathématiques et statistiques Sorghum bicolor modélisation des cultures modèle photopériodicité phénologie morphologie végétale facteur climatique http://aims.fao.org/aos/agrovoc/c_7247 http://aims.fao.org/aos/agrovoc/c_9000024 http://aims.fao.org/aos/agrovoc/c_4881 http://aims.fao.org/aos/agrovoc/c_5809 http://aims.fao.org/aos/agrovoc/c_5774 http://aims.fao.org/aos/agrovoc/c_13434 http://aims.fao.org/aos/agrovoc/c_29554 Afrique occidentale Mali Burkina Faso France http://aims.fao.org/aos/agrovoc/c_8355 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_8081 http://aims.fao.org/aos/agrovoc/c_3081 Better defining niches for the photoperiod sensitive sorghum (Sorghum bicolor L. Moench) varieties of West Africa into the local cropping system might help to improve the resilience of food production in the region. In particular, crop models are key tools to assess the growth and development of such varieties against climate and soil variability. In this study, we compared the performance of three process-based crop models (APSIM, DSSAT and Samara) for prediction of diverse sorghum germplasm having widely varying photoperiod sensitivity (PPS) using detailed growth and development observations from field trials conducted in West Africa semi-arid region. Our results confirmed the capability of each selected model to reproduce growth and development for varieties of diverse sensitivities to photoperiod. Simulated phenology and morphology organs during calibration and validation were within the closet range of measured values with the evaluation of model error statistics (RMSE and R2). With the exception of highly sensitive variety (IS15401), APSIM and Samara estimates indicate the lowest value of RMSE (<7days) against the observed values for phenology events (flowering and maturity) compared to DSSAT model. Across the varieties, there was over-estimation for simulated leaf area index (LAI) while total leaf number (TLN) fitted well with the observed values. Samara estimates were found to be the closet with the lowest RMSE values (<3 leaves for TLN and <1.0 m2/m2 for LAI) followed by DSSAT and APSIM respectively. Prediction of grain yield and biomass was less accurate for both calibration and validation. The predictions using APSIM were found to be closest to the observed followed by DSSAT and Samara models respectively. Based on detailed field observations, this study showed that crop models captured well the phenology and leaf development of the photoperiod sensitive (PPS) varieties of West Africa, but failed to estimate accurately partitioning of assimilates during grain filling. APSIM and SAMARA as more mechanistic crop models, have a higher sensitivity of the adjustment of key parameters, notably the specific leaf area for APSIM in low PPS varieties, while SAMARA shows a higher response to parameters changes for high PPS varieties. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/582341/1/Akinseye_etal_2017.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1016/j.fcr.2016.10.015 10.1016/j.fcr.2016.10.015 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.fcr.2016.10.015 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1016/j.fcr.2016.10.015