Genomic footprints of selection under domestication in old world camelids. [W122]

In many parts of the Old World, domesticated camels (genus Camelus) are an essential resource, providing food, labor, commodities, and sport to millions of people. Of the three extant species, two have been domesticated (single-humped dromedaries, Camelus dromedarius, and two-humped Bactrian camels Camelus bactrianus) and one remains wild (two-humped wild Bactrian camels Camelus ferus). All three species possess a variety of adaptations to harsh desert conditions, including mechanisms to tolerate extreme temperatures, dehydration, and sandy terrain. Recent genomic studies of camels have identified patterns of selection consistent with the aforementioned adaptations in addition to quantifying genetic variation and examining demographic history. However, these studies are limited to analyses based upon a single genome from each species, thus biasing many inferences of selection and adaptation. Furthermore, draft genomes are extremely susceptible to errors in the estimated number of genes, thereby distorting conclusions of adaptation based upon orthologous genes between species. In this study, we take a population genomics approach to inferring both positive selection and demographic history of Old World camelids. By re-sequencing multiple genomes from all three species, our objectives were to i) identify genes or regions under selection within and between species related to domestication and/or adaptation, ii) examine the recent demographic history and genome ancestry, and iii) provide an extensive set of genomic resources for future studies of camels. (Texte intégral)

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Main Authors: Fitak, Robert Rodgers, Mohandesan, Elmira, Corander, Jukka, Yadamsuren, Adiya, Chuluunbat, Battsetseg, Abdelhadi, Omer M.A., Raziq, Abdul, Faye, Bernard, Burger, Pamela A.
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Subjects:L10 - Génétique et amélioration des animaux, L60 - Taxonomie et géographie animales,
Online Access:http://agritrop.cirad.fr/581601/
http://agritrop.cirad.fr/581601/2/ID581601.pdf
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spelling dig-cirad-fr-5816012016-09-16T11:06:53Z http://agritrop.cirad.fr/581601/ http://agritrop.cirad.fr/581601/ Genomic footprints of selection under domestication in old world camelids. [W122]. Fitak Robert Rodgers, Mohandesan Elmira, Corander Jukka, Yadamsuren Adiya, Chuluunbat Battsetseg, Abdelhadi Omer M.A., Raziq Abdul, Faye Bernard, Burger Pamela A.. 2016. . San Diego : PAG, Résumé, 1 p. Plant and Animal Genome Conference. 24, San Diego, États-Unis, 9 Janvier 2016/13 Janvier 2016.https://pag.confex.com/pag/xxiv/webprogram/Paper18540.html <https://pag.confex.com/pag/xxiv/webprogram/Paper18540.html> Researchers Genomic footprints of selection under domestication in old world camelids. [W122] Fitak, Robert Rodgers Mohandesan, Elmira Corander, Jukka Yadamsuren, Adiya Chuluunbat, Battsetseg Abdelhadi, Omer M.A. Raziq, Abdul Faye, Bernard Burger, Pamela A. eng 2016 PAG L10 - Génétique et amélioration des animaux L60 - Taxonomie et géographie animales In many parts of the Old World, domesticated camels (genus Camelus) are an essential resource, providing food, labor, commodities, and sport to millions of people. Of the three extant species, two have been domesticated (single-humped dromedaries, Camelus dromedarius, and two-humped Bactrian camels Camelus bactrianus) and one remains wild (two-humped wild Bactrian camels Camelus ferus). All three species possess a variety of adaptations to harsh desert conditions, including mechanisms to tolerate extreme temperatures, dehydration, and sandy terrain. Recent genomic studies of camels have identified patterns of selection consistent with the aforementioned adaptations in addition to quantifying genetic variation and examining demographic history. However, these studies are limited to analyses based upon a single genome from each species, thus biasing many inferences of selection and adaptation. Furthermore, draft genomes are extremely susceptible to errors in the estimated number of genes, thereby distorting conclusions of adaptation based upon orthologous genes between species. In this study, we take a population genomics approach to inferring both positive selection and demographic history of Old World camelids. By re-sequencing multiple genomes from all three species, our objectives were to i) identify genes or regions under selection within and between species related to domestication and/or adaptation, ii) examine the recent demographic history and genome ancestry, and iii) provide an extensive set of genomic resources for future studies of camels. (Texte intégral) conference_item info:eu-repo/semantics/conferenceObject Conference info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/581601/2/ID581601.pdf text Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html https://pag.confex.com/pag/xxiv/webprogram/Paper18540.html info:eu-repo/semantics/altIdentifier/purl/https://pag.confex.com/pag/xxiv/webprogram/Paper18540.html
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic L10 - Génétique et amélioration des animaux
L60 - Taxonomie et géographie animales
L10 - Génétique et amélioration des animaux
L60 - Taxonomie et géographie animales
spellingShingle L10 - Génétique et amélioration des animaux
L60 - Taxonomie et géographie animales
L10 - Génétique et amélioration des animaux
L60 - Taxonomie et géographie animales
Fitak, Robert Rodgers
Mohandesan, Elmira
Corander, Jukka
Yadamsuren, Adiya
Chuluunbat, Battsetseg
Abdelhadi, Omer M.A.
Raziq, Abdul
Faye, Bernard
Burger, Pamela A.
Genomic footprints of selection under domestication in old world camelids. [W122]
description In many parts of the Old World, domesticated camels (genus Camelus) are an essential resource, providing food, labor, commodities, and sport to millions of people. Of the three extant species, two have been domesticated (single-humped dromedaries, Camelus dromedarius, and two-humped Bactrian camels Camelus bactrianus) and one remains wild (two-humped wild Bactrian camels Camelus ferus). All three species possess a variety of adaptations to harsh desert conditions, including mechanisms to tolerate extreme temperatures, dehydration, and sandy terrain. Recent genomic studies of camels have identified patterns of selection consistent with the aforementioned adaptations in addition to quantifying genetic variation and examining demographic history. However, these studies are limited to analyses based upon a single genome from each species, thus biasing many inferences of selection and adaptation. Furthermore, draft genomes are extremely susceptible to errors in the estimated number of genes, thereby distorting conclusions of adaptation based upon orthologous genes between species. In this study, we take a population genomics approach to inferring both positive selection and demographic history of Old World camelids. By re-sequencing multiple genomes from all three species, our objectives were to i) identify genes or regions under selection within and between species related to domestication and/or adaptation, ii) examine the recent demographic history and genome ancestry, and iii) provide an extensive set of genomic resources for future studies of camels. (Texte intégral)
format conference_item
topic_facet L10 - Génétique et amélioration des animaux
L60 - Taxonomie et géographie animales
author Fitak, Robert Rodgers
Mohandesan, Elmira
Corander, Jukka
Yadamsuren, Adiya
Chuluunbat, Battsetseg
Abdelhadi, Omer M.A.
Raziq, Abdul
Faye, Bernard
Burger, Pamela A.
author_facet Fitak, Robert Rodgers
Mohandesan, Elmira
Corander, Jukka
Yadamsuren, Adiya
Chuluunbat, Battsetseg
Abdelhadi, Omer M.A.
Raziq, Abdul
Faye, Bernard
Burger, Pamela A.
author_sort Fitak, Robert Rodgers
title Genomic footprints of selection under domestication in old world camelids. [W122]
title_short Genomic footprints of selection under domestication in old world camelids. [W122]
title_full Genomic footprints of selection under domestication in old world camelids. [W122]
title_fullStr Genomic footprints of selection under domestication in old world camelids. [W122]
title_full_unstemmed Genomic footprints of selection under domestication in old world camelids. [W122]
title_sort genomic footprints of selection under domestication in old world camelids. [w122]
publisher PAG
url http://agritrop.cirad.fr/581601/
http://agritrop.cirad.fr/581601/2/ID581601.pdf
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