Genome wide association study for drought tolerance and other agronomic traits of a Coffea canephora population

Recent technological advancements and cost decreases on DNA-sequencing technologies allowed the completion of a reference sequence of the C. canephora genome. In due time, perhaps with some delay, in view of the economic and social importance of coffee worldwide as well as its perennial aspect (vis à vis annual crops), to provide the research power to face the challenges lying ahead, imposed by the real/potential climate changes impacts. Studies on a genome-wide scale are now being performed allowing researchers to narrow down some key molecular players that will certainly be applicable to fast and cost-effective molecular breeding programs. This work describes a Genome Wide Association Study (GWAS) for drought tolerance and other important agronomic traits such as yield of a C. canephora conilon population, cultivated in Planaltina-DF (1175m altitude) at the experimental field of Embrapa Cerrados. Phenotyping started in 2012, evaluating characteristics such as vigor, secondary branching, leaf-rust susceptibility, precocity and fruit load. Furthermore, the yield of each plant was measured for three consecutive years (2012-2014) and the predawn-leaf water potential (am) of 400 plants was also evaluated under field conditions (drought season of 2012/2013). Genotyping was performed using the nextRAD technique provided by SNPSaurus (http://snpsaurus.com/), yielding 11.230 SNPs with a call rate above 80%. Population structure was determined using the admixture model of the software STRUCURE. Marker-trait associations (MTAs) studies were conducted employing mixed linear model (MLM) analysis with optimum compression and kinship matrix (TASSEL). Significant MTAs were found and will be presented. (Texte intégral)

Bibliographic Details

Main Authors:	Carneiro, Fernanda A, Rego, Erica C.S., Aquino, Sinara O., Costa, Tatiana S., Lima, E.A., Rocha, Omar C., Rodrigues, Gustavo Costa, Carvalho, Milene Alves de Figueiredo, Veiga, Adriano Delly, Guerra, Antonio Fernando, Bartholo, Gabriel Ferreira, Silva-Júnior, O.B., Marraccini, Pierre, Grattapaglia, Dario, Andrade, Alan Carvalho
Format:	conference_item biblioteca
Language:	eng
Published:	INRA
Subjects:	F30 - Génétique et amélioration des plantes, H50 - Troubles divers des plantes, F60 - Physiologie et biochimie végétale, U10 - Informatique, mathématiques et statistiques,
Online Access:	http://agritrop.cirad.fr/579014/ http://agritrop.cirad.fr/579014/1/SOL%202015%20OC48%20Carneiro%20et%20al..pdf
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