Binding sites of mirnas with transcription factors' genes of Camelus ferus
We searched binding sites of miRNAs in mRNAs of 157 transcription factors' genes of wild camel (Camelus ferus). The mRNAs of 96 genes of zincfinger transcription factors' family have 16, 210 and 34 binding sites in the 5'UTRs, CDSs and 3'UTRs, respectively. The mRNA of GLI2 gene has binding sites for eight miRNAs. The mRNAs of GLIS1 and ZNF236 genes contain seven binding sites. In the 3'UTR mRNA of ZFP91 gene were revealed 13 miR-574-5p binding sites arranged located through two nucleotides. The ΔG/ΔGm value is equal to 93%. miR-1322 has one binding site in GLI1, HINFP, HIVEP1, MTF1, SALL4, SP1, ZNF335 and ZNF451 genes, two sites in ZNF142, three sites in EGR1 gene. mRNA of VEZF1 gene has eight miR-1322 binding sites arranged located through three nucleotides. miRNAs with the length of 25 and 26 nucleotides have the highest binding energy. The ΔG value varied from -114,6 kJ/mole to -138,0 kJ/mole. Some miRNAs with a length of 23 and 24 nucleotides also have a high value ΔG varied from -112,5 kJ/mole to -129,5 kJ/mole. The results show a strong interaction between the expression of genes of transcription factors and miRNAs.
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Subjects: | L10 - Génétique et amélioration des animaux, Camelus, animal sauvage, Transcription génique, arn, facteur de transcription, expression des gènes, genre humain, http://aims.fao.org/aos/agrovoc/c_9558, http://aims.fao.org/aos/agrovoc/c_24103, http://aims.fao.org/aos/agrovoc/c_35128, http://aims.fao.org/aos/agrovoc/c_6618, http://aims.fao.org/aos/agrovoc/c_35345, http://aims.fao.org/aos/agrovoc/c_27527, http://aims.fao.org/aos/agrovoc/c_4586, |
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dig-cirad-fr-5774152024-01-28T22:53:17Z http://agritrop.cirad.fr/577415/ http://agritrop.cirad.fr/577415/ Binding sites of mirnas with transcription factors' genes of Camelus ferus. Alybaeva Aigul, Berillo O., Niyazova R., Faye Bernard, Ivashchenko Anatoly. 2015. Veterinariâ, 42 (2), n.spéc. Silk road camel: The camelids, main stake for sustainable development : 340-342. 4th Conference of the International Society of Camelid Research and Development/ISOCARD 2015. 4, Almaty, Kazakhstan, 8 Juin 2015/12 Juin 2015.http://www.isocard.net/en/proceedings/detail/74 <http://www.isocard.net/en/proceedings/detail/74> Binding sites of mirnas with transcription factors' genes of Camelus ferus Alybaeva, Aigul Berillo, O. Niyazova, R. Faye, Bernard Ivashchenko, Anatoly eng 2015 Veterinariâ L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 We searched binding sites of miRNAs in mRNAs of 157 transcription factors' genes of wild camel (Camelus ferus). The mRNAs of 96 genes of zincfinger transcription factors' family have 16, 210 and 34 binding sites in the 5'UTRs, CDSs and 3'UTRs, respectively. The mRNA of GLI2 gene has binding sites for eight miRNAs. The mRNAs of GLIS1 and ZNF236 genes contain seven binding sites. In the 3'UTR mRNA of ZFP91 gene were revealed 13 miR-574-5p binding sites arranged located through two nucleotides. The ΔG/ΔGm value is equal to 93%. miR-1322 has one binding site in GLI1, HINFP, HIVEP1, MTF1, SALL4, SP1, ZNF335 and ZNF451 genes, two sites in ZNF142, three sites in EGR1 gene. mRNA of VEZF1 gene has eight miR-1322 binding sites arranged located through three nucleotides. miRNAs with the length of 25 and 26 nucleotides have the highest binding energy. The ΔG value varied from -114,6 kJ/mole to -138,0 kJ/mole. Some miRNAs with a length of 23 and 24 nucleotides also have a high value ΔG varied from -112,5 kJ/mole to -129,5 kJ/mole. The results show a strong interaction between the expression of genes of transcription factors and miRNAs. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/577415/1/ID577415.pdf text Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html http://www.isocard.net/en/proceedings/detail/74 http://catalogue-bibliotheques.cirad.fr/cgi-bin/koha/opac-detail.pl?biblionumber=220129 info:eu-repo/semantics/altIdentifier/purl/http://www.isocard.net/en/proceedings/detail/74 |
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L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 |
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L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 Alybaeva, Aigul Berillo, O. Niyazova, R. Faye, Bernard Ivashchenko, Anatoly Binding sites of mirnas with transcription factors' genes of Camelus ferus |
description |
We searched binding sites of miRNAs in mRNAs of 157 transcription factors' genes of wild camel (Camelus ferus). The mRNAs of 96 genes of zincfinger transcription factors' family have 16, 210 and 34 binding sites in the 5'UTRs, CDSs and 3'UTRs, respectively. The mRNA of GLI2 gene has binding sites for eight miRNAs. The mRNAs of GLIS1 and ZNF236 genes contain seven binding sites. In the 3'UTR mRNA of ZFP91 gene were revealed 13 miR-574-5p binding sites arranged located through two nucleotides. The ΔG/ΔGm value is equal to 93%. miR-1322 has one binding site in GLI1, HINFP, HIVEP1, MTF1, SALL4, SP1, ZNF335 and ZNF451 genes, two sites in ZNF142, three sites in EGR1 gene. mRNA of VEZF1 gene has eight miR-1322 binding sites arranged located through three nucleotides. miRNAs with the length of 25 and 26 nucleotides have the highest binding energy. The ΔG value varied from -114,6 kJ/mole to -138,0 kJ/mole. Some miRNAs with a length of 23 and 24 nucleotides also have a high value ΔG varied from -112,5 kJ/mole to -129,5 kJ/mole. The results show a strong interaction between the expression of genes of transcription factors and miRNAs. |
format |
article |
topic_facet |
L10 - Génétique et amélioration des animaux Camelus animal sauvage Transcription génique arn facteur de transcription expression des gènes genre humain http://aims.fao.org/aos/agrovoc/c_9558 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_35128 http://aims.fao.org/aos/agrovoc/c_6618 http://aims.fao.org/aos/agrovoc/c_35345 http://aims.fao.org/aos/agrovoc/c_27527 http://aims.fao.org/aos/agrovoc/c_4586 |
author |
Alybaeva, Aigul Berillo, O. Niyazova, R. Faye, Bernard Ivashchenko, Anatoly |
author_facet |
Alybaeva, Aigul Berillo, O. Niyazova, R. Faye, Bernard Ivashchenko, Anatoly |
author_sort |
Alybaeva, Aigul |
title |
Binding sites of mirnas with transcription factors' genes of Camelus ferus |
title_short |
Binding sites of mirnas with transcription factors' genes of Camelus ferus |
title_full |
Binding sites of mirnas with transcription factors' genes of Camelus ferus |
title_fullStr |
Binding sites of mirnas with transcription factors' genes of Camelus ferus |
title_full_unstemmed |
Binding sites of mirnas with transcription factors' genes of Camelus ferus |
title_sort |
binding sites of mirnas with transcription factors' genes of camelus ferus |
url |
http://agritrop.cirad.fr/577415/ http://agritrop.cirad.fr/577415/1/ID577415.pdf |
work_keys_str_mv |
AT alybaevaaigul bindingsitesofmirnaswithtranscriptionfactorsgenesofcamelusferus AT berilloo bindingsitesofmirnaswithtranscriptionfactorsgenesofcamelusferus AT niyazovar bindingsitesofmirnaswithtranscriptionfactorsgenesofcamelusferus AT fayebernard bindingsitesofmirnaswithtranscriptionfactorsgenesofcamelusferus AT ivashchenkoanatoly bindingsitesofmirnaswithtranscriptionfactorsgenesofcamelusferus |
_version_ |
1792498884476403712 |