Identification of novel Bromus- and Trifolium-associated circular DNA viruses
The genomes of a large number of highly diverse novel circular DNA viruses from a wide range of sources have been characterised in recent years, including circular single-stranded DNA (ssDNA) viruses that share similarities with plant-infecting ssDNA viruses of the family Geminiviridae. Here, we describe six novel circular DNA viral genomes that encode replication-associated (Rep) proteins that are most closely related to those of either geminiviruses or gemycircularviruses (a new group of ssDNA viruses that are closely related to geminiviruses). Four possible viral genomes were recovered from Bromus hordeaceus sampled in New Zealand, and two were recovered from B. hordeaceus and Trifolium resupinatum sampled in France. Two of the viral genomes from New Zealand (one from the North Island and one from the South Island each) share >99 % sequence identity, and two genomes recovered from B. hordeaceus and T. resupinatum sampled in France share 74 % identity. All of the viral genomes that were recovered were found to have a major open reading frame on both their complementary and virion-sense strands, one of which likely encodes a Rep and the other a capsid protein. Although future infectivity studies are needed to identify the host range of these viruses, this is the first report of circular DNA viruses associated with grasses in New Zealand.
Main Authors: | , , , , , , , , |
---|---|
Format: | article biblioteca |
Language: | eng |
Subjects: | H20 - Maladies des plantes, Geminiviridae, identification, génome, virus ADNsb, virologie, Trifolium resupinatum, génomique, adn, virus des végétaux, phylogénie, http://aims.fao.org/aos/agrovoc/c_32859, http://aims.fao.org/aos/agrovoc/c_3791, http://aims.fao.org/aos/agrovoc/c_3224, http://aims.fao.org/aos/agrovoc/c_d469d8f8, http://aims.fao.org/aos/agrovoc/c_8259, http://aims.fao.org/aos/agrovoc/c_7919, http://aims.fao.org/aos/agrovoc/c_92382, http://aims.fao.org/aos/agrovoc/c_2347, http://aims.fao.org/aos/agrovoc/c_5985, http://aims.fao.org/aos/agrovoc/c_13325, http://aims.fao.org/aos/agrovoc/c_3081, http://aims.fao.org/aos/agrovoc/c_5164, |
Online Access: | http://agritrop.cirad.fr/576208/ http://agritrop.cirad.fr/576208/1/576208.pdf |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
id |
dig-cirad-fr-576208 |
---|---|
record_format |
koha |
spelling |
dig-cirad-fr-5762082024-01-29T05:32:06Z http://agritrop.cirad.fr/576208/ http://agritrop.cirad.fr/576208/ Identification of novel Bromus- and Trifolium-associated circular DNA viruses. Kraberger Simona, Farkas Kata, Bernardo Pauline, Booker Cameron, Argüello-Astorga Gerardo, Mesleard François, Martin Darren Patrick, Roumagnac Philippe, Varsani Arvind. 2015. Archives of Virology, 160 (5) : 1303-1311.https://doi.org/10.1007/s00705-015-2358-6 <https://doi.org/10.1007/s00705-015-2358-6> Identification of novel Bromus- and Trifolium-associated circular DNA viruses Kraberger, Simona Farkas, Kata Bernardo, Pauline Booker, Cameron Argüello-Astorga, Gerardo Mesleard, François Martin, Darren Patrick Roumagnac, Philippe Varsani, Arvind eng 2015 Archives of Virology H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 France Nouvelle-Zélande http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 The genomes of a large number of highly diverse novel circular DNA viruses from a wide range of sources have been characterised in recent years, including circular single-stranded DNA (ssDNA) viruses that share similarities with plant-infecting ssDNA viruses of the family Geminiviridae. Here, we describe six novel circular DNA viral genomes that encode replication-associated (Rep) proteins that are most closely related to those of either geminiviruses or gemycircularviruses (a new group of ssDNA viruses that are closely related to geminiviruses). Four possible viral genomes were recovered from Bromus hordeaceus sampled in New Zealand, and two were recovered from B. hordeaceus and Trifolium resupinatum sampled in France. Two of the viral genomes from New Zealand (one from the North Island and one from the South Island each) share >99 % sequence identity, and two genomes recovered from B. hordeaceus and T. resupinatum sampled in France share 74 % identity. All of the viral genomes that were recovered were found to have a major open reading frame on both their complementary and virion-sense strands, one of which likely encodes a Rep and the other a capsid protein. Although future infectivity studies are needed to identify the host range of these viruses, this is the first report of circular DNA viruses associated with grasses in New Zealand. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/576208/1/576208.pdf text Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s00705-015-2358-6 10.1007/s00705-015-2358-6 info:eu-repo/semantics/altIdentifier/doi/10.1007/s00705-015-2358-6 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s00705-015-2358-6 info:eu-repo/semantics/dataset/purl/http://www.ncbi.nlm.nih.gov/nuccore/KM510189 info:eu-repo/semantics/dataset/purl/http://www.ncbi.nlm.nih.gov/nuccore/KM510190 info:eu-repo/semantics/dataset/purl/http://www.ncbi.nlm.nih.gov/nuccore/KM510191 info:eu-repo/semantics/dataset/purl/http://www.ncbi.nlm.nih.gov/nuccore/KM510192 info:eu-repo/semantics/dataset/purl/http://www.ncbi.nlm.nih.gov/nuccore/KP005454 |
institution |
CIRAD FR |
collection |
DSpace |
country |
Francia |
countrycode |
FR |
component |
Bibliográfico |
access |
En linea |
databasecode |
dig-cirad-fr |
tag |
biblioteca |
region |
Europa del Oeste |
libraryname |
Biblioteca del CIRAD Francia |
language |
eng |
topic |
H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 |
spellingShingle |
H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 Kraberger, Simona Farkas, Kata Bernardo, Pauline Booker, Cameron Argüello-Astorga, Gerardo Mesleard, François Martin, Darren Patrick Roumagnac, Philippe Varsani, Arvind Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
description |
The genomes of a large number of highly diverse novel circular DNA viruses from a wide range of sources have been characterised in recent years, including circular single-stranded DNA (ssDNA) viruses that share similarities with plant-infecting ssDNA viruses of the family Geminiviridae. Here, we describe six novel circular DNA viral genomes that encode replication-associated (Rep) proteins that are most closely related to those of either geminiviruses or gemycircularviruses (a new group of ssDNA viruses that are closely related to geminiviruses). Four possible viral genomes were recovered from Bromus hordeaceus sampled in New Zealand, and two were recovered from B. hordeaceus and Trifolium resupinatum sampled in France. Two of the viral genomes from New Zealand (one from the North Island and one from the South Island each) share >99 % sequence identity, and two genomes recovered from B. hordeaceus and T. resupinatum sampled in France share 74 % identity. All of the viral genomes that were recovered were found to have a major open reading frame on both their complementary and virion-sense strands, one of which likely encodes a Rep and the other a capsid protein. Although future infectivity studies are needed to identify the host range of these viruses, this is the first report of circular DNA viruses associated with grasses in New Zealand. |
format |
article |
topic_facet |
H20 - Maladies des plantes Geminiviridae identification génome virus ADNsb virologie Trifolium resupinatum génomique adn virus des végétaux phylogénie http://aims.fao.org/aos/agrovoc/c_32859 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_3224 http://aims.fao.org/aos/agrovoc/c_d469d8f8 http://aims.fao.org/aos/agrovoc/c_8259 http://aims.fao.org/aos/agrovoc/c_7919 http://aims.fao.org/aos/agrovoc/c_92382 http://aims.fao.org/aos/agrovoc/c_2347 http://aims.fao.org/aos/agrovoc/c_5985 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3081 http://aims.fao.org/aos/agrovoc/c_5164 |
author |
Kraberger, Simona Farkas, Kata Bernardo, Pauline Booker, Cameron Argüello-Astorga, Gerardo Mesleard, François Martin, Darren Patrick Roumagnac, Philippe Varsani, Arvind |
author_facet |
Kraberger, Simona Farkas, Kata Bernardo, Pauline Booker, Cameron Argüello-Astorga, Gerardo Mesleard, François Martin, Darren Patrick Roumagnac, Philippe Varsani, Arvind |
author_sort |
Kraberger, Simona |
title |
Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
title_short |
Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
title_full |
Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
title_fullStr |
Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
title_full_unstemmed |
Identification of novel Bromus- and Trifolium-associated circular DNA viruses |
title_sort |
identification of novel bromus- and trifolium-associated circular dna viruses |
url |
http://agritrop.cirad.fr/576208/ http://agritrop.cirad.fr/576208/1/576208.pdf |
work_keys_str_mv |
AT krabergersimona identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT farkaskata identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT bernardopauline identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT bookercameron identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT arguelloastorgagerardo identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT mesleardfrancois identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT martindarrenpatrick identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT roumagnacphilippe identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses AT varsaniarvind identificationofnovelbromusandtrifoliumassociatedcirculardnaviruses |
_version_ |
1792498836835401728 |