Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population
Developing and deploying cotton cultivars with high nutrient uptake, use efficiency and tolerance to nutrient related soil stresses is desirable to assist sustainable soil management. Genetic variation, heritability, selection response and quantitative trait loci (QTLs) were investigated for five macronutrients (P, K, Ca, Mg, S) and five micronutrients (Fe, Mn, B, Zn, and Cu) in a recombinant inbred line (RIL) population from an inter-specific cross between Gossypium hirsutum cv. Guazuncho 2, and G. barbadense accession VH8-4602. Na and K/Na ratio were also studied as the imbalance between Na and other nutrients is detrimental to cotton growth and development. The concentrations of nutrients were measured for different plant parts of the two parents and for leaf samples of the whole population collected at early to peak flowering in field experiments over two years in a sodic Vertosol soil. Parental contrast was large for most nutrient concentrations in leaves when compared with other plant parts. Segregation for leaf nutrient concentration was observed within the population with transgression for P, K, K/Na ratio and all micronutrients. Genotypic difference was the major factor behind within-population variation for most nutrients, while narrow sense heritability was moderate (0.27 for Mn and Cu, and 0.43 for B). At least one significant QTL was identified for each nutrient except K and more than half of those QTLs were clustered on chromosomes 14, 18 and 22. Selection response was predicted to be low for P and all micronutrients except B, high for K, Na and B, and very high for K/Na ratio. Correlations were more common between macronutrients, Na and K/Na ratio where the nature and strength of the relations varied (r=-0.69 to 0.76). We conclude that there is sufficient genetic diversity between these two tetraploid cotton species that could be exploited to improve cotton nutrient status by introgressing species-unique favourable alleles.
id |
dig-cirad-fr-576072 |
---|---|
record_format |
koha |
institution |
CIRAD FR |
collection |
DSpace |
country |
Francia |
countrycode |
FR |
component |
Bibliográfico |
access |
En linea |
databasecode |
dig-cirad-fr |
tag |
biblioteca |
region |
Europa del Oeste |
libraryname |
Biblioteca del CIRAD Francia |
language |
eng |
topic |
F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 http://aims.fao.org/aos/agrovoc/c_714 F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 http://aims.fao.org/aos/agrovoc/c_714 |
spellingShingle |
F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 http://aims.fao.org/aos/agrovoc/c_714 F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 http://aims.fao.org/aos/agrovoc/c_714 Liu, Shiming Lacape, Jean-Marc Constable, Greg A. Llewellyn, Danny Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
description |
Developing and deploying cotton cultivars with high nutrient uptake, use efficiency and tolerance to nutrient related soil stresses is desirable to assist sustainable soil management. Genetic variation, heritability, selection response and quantitative trait loci (QTLs) were investigated for five macronutrients (P, K, Ca, Mg, S) and five micronutrients (Fe, Mn, B, Zn, and Cu) in a recombinant inbred line (RIL) population from an inter-specific cross between Gossypium hirsutum cv. Guazuncho 2, and G. barbadense accession VH8-4602. Na and K/Na ratio were also studied as the imbalance between Na and other nutrients is detrimental to cotton growth and development. The concentrations of nutrients were measured for different plant parts of the two parents and for leaf samples of the whole population collected at early to peak flowering in field experiments over two years in a sodic Vertosol soil. Parental contrast was large for most nutrient concentrations in leaves when compared with other plant parts. Segregation for leaf nutrient concentration was observed within the population with transgression for P, K, K/Na ratio and all micronutrients. Genotypic difference was the major factor behind within-population variation for most nutrients, while narrow sense heritability was moderate (0.27 for Mn and Cu, and 0.43 for B). At least one significant QTL was identified for each nutrient except K and more than half of those QTLs were clustered on chromosomes 14, 18 and 22. Selection response was predicted to be low for P and all micronutrients except B, high for K, Na and B, and very high for K/Na ratio. Correlations were more common between macronutrients, Na and K/Na ratio where the nature and strength of the relations varied (r=-0.69 to 0.76). We conclude that there is sufficient genetic diversity between these two tetraploid cotton species that could be exploited to improve cotton nutrient status by introgressing species-unique favourable alleles. |
format |
article |
topic_facet |
F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 http://aims.fao.org/aos/agrovoc/c_714 |
author |
Liu, Shiming Lacape, Jean-Marc Constable, Greg A. Llewellyn, Danny |
author_facet |
Liu, Shiming Lacape, Jean-Marc Constable, Greg A. Llewellyn, Danny |
author_sort |
Liu, Shiming |
title |
Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
title_short |
Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
title_full |
Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
title_fullStr |
Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
title_full_unstemmed |
Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population |
title_sort |
inheritance and qtl mapping of leaf nutrient concentration in a cotton inter-specific derived ril population |
url |
http://agritrop.cirad.fr/576072/ http://agritrop.cirad.fr/576072/1/576072.pdf |
work_keys_str_mv |
AT liushiming inheritanceandqtlmappingofleafnutrientconcentrationinacottoninterspecificderivedrilpopulation AT lacapejeanmarc inheritanceandqtlmappingofleafnutrientconcentrationinacottoninterspecificderivedrilpopulation AT constablegrega inheritanceandqtlmappingofleafnutrientconcentrationinacottoninterspecificderivedrilpopulation AT llewellyndanny inheritanceandqtlmappingofleafnutrientconcentrationinacottoninterspecificderivedrilpopulation |
_version_ |
1792498827970740224 |
spelling |
dig-cirad-fr-5760722024-01-28T22:41:47Z http://agritrop.cirad.fr/576072/ http://agritrop.cirad.fr/576072/ Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population. Liu Shiming, Lacape Jean-Marc, Constable Greg A., Llewellyn Danny. 2015. PloS One, 10 (5):e0128100, 19 p.https://doi.org/10.1371/journal.pone.0128100 <https://doi.org/10.1371/journal.pone.0128100> Inheritance and QTL mapping of leaf nutrient concentration in a cotton inter-specific derived RIL population Liu, Shiming Lacape, Jean-Marc Constable, Greg A. Llewellyn, Danny eng 2015 PloS One F30 - Génétique et amélioration des plantes F61 - Physiologie végétale - Nutrition P35 - Fertilité du sol Gossypium hirsutum Gossypium barbadense amélioration des plantes physiologie de la nutrition lignée locus des caractères quantitatifs héritabilité feuille carte génétique phénotype variation génétique absorption de substances nutritives substance nutritive utilisation des nutriments fertilité du sol croissance développement biologique Vertisol http://aims.fao.org/aos/agrovoc/c_3339 http://aims.fao.org/aos/agrovoc/c_3337 http://aims.fao.org/aos/agrovoc/c_5956 http://aims.fao.org/aos/agrovoc/c_5275 http://aims.fao.org/aos/agrovoc/c_29225 http://aims.fao.org/aos/agrovoc/c_37974 http://aims.fao.org/aos/agrovoc/c_3570 http://aims.fao.org/aos/agrovoc/c_4243 http://aims.fao.org/aos/agrovoc/c_24002 http://aims.fao.org/aos/agrovoc/c_5776 http://aims.fao.org/aos/agrovoc/c_15975 http://aims.fao.org/aos/agrovoc/c_5273 http://aims.fao.org/aos/agrovoc/c_5274 http://aims.fao.org/aos/agrovoc/c_36245 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_3394 http://aims.fao.org/aos/agrovoc/c_921 http://aims.fao.org/aos/agrovoc/c_8199 Australie http://aims.fao.org/aos/agrovoc/c_714 Developing and deploying cotton cultivars with high nutrient uptake, use efficiency and tolerance to nutrient related soil stresses is desirable to assist sustainable soil management. Genetic variation, heritability, selection response and quantitative trait loci (QTLs) were investigated for five macronutrients (P, K, Ca, Mg, S) and five micronutrients (Fe, Mn, B, Zn, and Cu) in a recombinant inbred line (RIL) population from an inter-specific cross between Gossypium hirsutum cv. Guazuncho 2, and G. barbadense accession VH8-4602. Na and K/Na ratio were also studied as the imbalance between Na and other nutrients is detrimental to cotton growth and development. The concentrations of nutrients were measured for different plant parts of the two parents and for leaf samples of the whole population collected at early to peak flowering in field experiments over two years in a sodic Vertosol soil. Parental contrast was large for most nutrient concentrations in leaves when compared with other plant parts. Segregation for leaf nutrient concentration was observed within the population with transgression for P, K, K/Na ratio and all micronutrients. Genotypic difference was the major factor behind within-population variation for most nutrients, while narrow sense heritability was moderate (0.27 for Mn and Cu, and 0.43 for B). At least one significant QTL was identified for each nutrient except K and more than half of those QTLs were clustered on chromosomes 14, 18 and 22. Selection response was predicted to be low for P and all micronutrients except B, high for K, Na and B, and very high for K/Na ratio. Correlations were more common between macronutrients, Na and K/Na ratio where the nature and strength of the relations varied (r=-0.69 to 0.76). We conclude that there is sufficient genetic diversity between these two tetraploid cotton species that could be exploited to improve cotton nutrient status by introgressing species-unique favourable alleles. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/576072/1/576072.pdf text cc_by info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by/4.0/ https://doi.org/10.1371/journal.pone.0128100 10.1371/journal.pone.0128100 info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0128100 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1371/journal.pone.0128100 |