Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations

Introducing nitrogen-fixing bacteria as an inoculum in association with legume crops is a common practice in agriculture. However, the question of the evolution of these introduced microorganisms remains crucial, both in terms of microbial ecology and agronomy. We explored this question by analyzing the genetic and symbiotic evolution of two Bradyrhizobium strains inoculated on Acacia mangium in Malaysia and Senegal 15 and 5 years, respectively, after their introduction. Based on typing of several loci, we showed that these two strains, although closely related and originally sampled in Australia, evolved differently. One strain was recovered in soil with the same five loci as the original isolate, whereas the symbiotic cluster of the other strain was detected with no trace of the three housekeeping genes of the original inoculum. Moreover, the nitrogen fixation efficiency was variable among these isolates (either recombinant or not), with significantly high, low, or similar efficiencies compared to the two original strains and no significant difference between recombinant and nonrecombinant isolates. These data suggested that 15 years after their introduction, nitrogen-fixing bacteria remain in the soil but that closely related inoculant strains may not evolve in the same way, either genetically or symbiotically. In a context of increasing agronomical use of microbial inoculants (for biological control, nitrogen fixation, or plant growth promotion), this result feeds the debate on the consequences associated with such practices.

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Main Authors: Perrineau, Marie-Mathilde, Le Roux, Christine, Galiana, Antoine, Faye, Aliou, Duponnois, Robin, Goh, Doreen Kim Soh, Prin, Yves, Béna, Gilles
Format: article biblioteca
Language:eng
Subjects:P34 - Biologie du sol, K01 - Foresterie - Considérations générales, Acacia mangium, Bradyrhizobium, écologie microbienne, génétique des populations, dynamique des populations, recombinaison, bactérie fixatrice de l'azote, Fixation de l'azote, efficacité, inoculation, impact sur l'environnement, évaluation de l'impact, http://aims.fao.org/aos/agrovoc/c_42, http://aims.fao.org/aos/agrovoc/c_27138, http://aims.fao.org/aos/agrovoc/c_24111, http://aims.fao.org/aos/agrovoc/c_34326, http://aims.fao.org/aos/agrovoc/c_6111, http://aims.fao.org/aos/agrovoc/c_6475, http://aims.fao.org/aos/agrovoc/c_27939, http://aims.fao.org/aos/agrovoc/c_5196, http://aims.fao.org/aos/agrovoc/c_2491, http://aims.fao.org/aos/agrovoc/c_3879, http://aims.fao.org/aos/agrovoc/c_24420, http://aims.fao.org/aos/agrovoc/c_37938, http://aims.fao.org/aos/agrovoc/c_6970, http://aims.fao.org/aos/agrovoc/c_4533, http://aims.fao.org/aos/agrovoc/c_714,
Online Access:http://agritrop.cirad.fr/573815/
http://agritrop.cirad.fr/573815/1/document_573815.pdf
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spelling dig-cirad-fr-5738152024-01-28T22:10:59Z http://agritrop.cirad.fr/573815/ http://agritrop.cirad.fr/573815/ Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations. Perrineau Marie-Mathilde, Le Roux Christine, Galiana Antoine, Faye Aliou, Duponnois Robin, Goh Doreen Kim Soh, Prin Yves, Béna Gilles. 2014. Applied and Environmental Microbiology, 80 (18) : 5709-5716.https://doi.org/10.1128/AEM.02007-14 <https://doi.org/10.1128/AEM.02007-14> Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations Perrineau, Marie-Mathilde Le Roux, Christine Galiana, Antoine Faye, Aliou Duponnois, Robin Goh, Doreen Kim Soh Prin, Yves Béna, Gilles eng 2014 Applied and Environmental Microbiology P34 - Biologie du sol K01 - Foresterie - Considérations générales Acacia mangium Bradyrhizobium écologie microbienne génétique des populations dynamique des populations recombinaison bactérie fixatrice de l'azote Fixation de l'azote efficacité inoculation impact sur l'environnement évaluation de l'impact http://aims.fao.org/aos/agrovoc/c_42 http://aims.fao.org/aos/agrovoc/c_27138 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_34326 http://aims.fao.org/aos/agrovoc/c_6111 http://aims.fao.org/aos/agrovoc/c_6475 http://aims.fao.org/aos/agrovoc/c_27939 http://aims.fao.org/aos/agrovoc/c_5196 http://aims.fao.org/aos/agrovoc/c_2491 http://aims.fao.org/aos/agrovoc/c_3879 http://aims.fao.org/aos/agrovoc/c_24420 http://aims.fao.org/aos/agrovoc/c_37938 Sénégal Malaisie Australie http://aims.fao.org/aos/agrovoc/c_6970 http://aims.fao.org/aos/agrovoc/c_4533 http://aims.fao.org/aos/agrovoc/c_714 Introducing nitrogen-fixing bacteria as an inoculum in association with legume crops is a common practice in agriculture. However, the question of the evolution of these introduced microorganisms remains crucial, both in terms of microbial ecology and agronomy. We explored this question by analyzing the genetic and symbiotic evolution of two Bradyrhizobium strains inoculated on Acacia mangium in Malaysia and Senegal 15 and 5 years, respectively, after their introduction. Based on typing of several loci, we showed that these two strains, although closely related and originally sampled in Australia, evolved differently. One strain was recovered in soil with the same five loci as the original isolate, whereas the symbiotic cluster of the other strain was detected with no trace of the three housekeeping genes of the original inoculum. Moreover, the nitrogen fixation efficiency was variable among these isolates (either recombinant or not), with significantly high, low, or similar efficiencies compared to the two original strains and no significant difference between recombinant and nonrecombinant isolates. These data suggested that 15 years after their introduction, nitrogen-fixing bacteria remain in the soil but that closely related inoculant strains may not evolve in the same way, either genetically or symbiotically. In a context of increasing agronomical use of microbial inoculants (for biological control, nitrogen fixation, or plant growth promotion), this result feeds the debate on the consequences associated with such practices. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/573815/1/document_573815.pdf application/pdf Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1128/AEM.02007-14 10.1128/AEM.02007-14 info:eu-repo/semantics/altIdentifier/doi/10.1128/AEM.02007-14 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1128/AEM.02007-14
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic P34 - Biologie du sol
K01 - Foresterie - Considérations générales
Acacia mangium
Bradyrhizobium
écologie microbienne
génétique des populations
dynamique des populations
recombinaison
bactérie fixatrice de l'azote
Fixation de l'azote
efficacité
inoculation
impact sur l'environnement
évaluation de l'impact
http://aims.fao.org/aos/agrovoc/c_42
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_24111
http://aims.fao.org/aos/agrovoc/c_34326
http://aims.fao.org/aos/agrovoc/c_6111
http://aims.fao.org/aos/agrovoc/c_6475
http://aims.fao.org/aos/agrovoc/c_27939
http://aims.fao.org/aos/agrovoc/c_5196
http://aims.fao.org/aos/agrovoc/c_2491
http://aims.fao.org/aos/agrovoc/c_3879
http://aims.fao.org/aos/agrovoc/c_24420
http://aims.fao.org/aos/agrovoc/c_37938
http://aims.fao.org/aos/agrovoc/c_6970
http://aims.fao.org/aos/agrovoc/c_4533
http://aims.fao.org/aos/agrovoc/c_714
P34 - Biologie du sol
K01 - Foresterie - Considérations générales
Acacia mangium
Bradyrhizobium
écologie microbienne
génétique des populations
dynamique des populations
recombinaison
bactérie fixatrice de l'azote
Fixation de l'azote
efficacité
inoculation
impact sur l'environnement
évaluation de l'impact
http://aims.fao.org/aos/agrovoc/c_42
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_24111
http://aims.fao.org/aos/agrovoc/c_34326
http://aims.fao.org/aos/agrovoc/c_6111
http://aims.fao.org/aos/agrovoc/c_6475
http://aims.fao.org/aos/agrovoc/c_27939
http://aims.fao.org/aos/agrovoc/c_5196
http://aims.fao.org/aos/agrovoc/c_2491
http://aims.fao.org/aos/agrovoc/c_3879
http://aims.fao.org/aos/agrovoc/c_24420
http://aims.fao.org/aos/agrovoc/c_37938
http://aims.fao.org/aos/agrovoc/c_6970
http://aims.fao.org/aos/agrovoc/c_4533
http://aims.fao.org/aos/agrovoc/c_714
spellingShingle P34 - Biologie du sol
K01 - Foresterie - Considérations générales
Acacia mangium
Bradyrhizobium
écologie microbienne
génétique des populations
dynamique des populations
recombinaison
bactérie fixatrice de l'azote
Fixation de l'azote
efficacité
inoculation
impact sur l'environnement
évaluation de l'impact
http://aims.fao.org/aos/agrovoc/c_42
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_24111
http://aims.fao.org/aos/agrovoc/c_34326
http://aims.fao.org/aos/agrovoc/c_6111
http://aims.fao.org/aos/agrovoc/c_6475
http://aims.fao.org/aos/agrovoc/c_27939
http://aims.fao.org/aos/agrovoc/c_5196
http://aims.fao.org/aos/agrovoc/c_2491
http://aims.fao.org/aos/agrovoc/c_3879
http://aims.fao.org/aos/agrovoc/c_24420
http://aims.fao.org/aos/agrovoc/c_37938
http://aims.fao.org/aos/agrovoc/c_6970
http://aims.fao.org/aos/agrovoc/c_4533
http://aims.fao.org/aos/agrovoc/c_714
P34 - Biologie du sol
K01 - Foresterie - Considérations générales
Acacia mangium
Bradyrhizobium
écologie microbienne
génétique des populations
dynamique des populations
recombinaison
bactérie fixatrice de l'azote
Fixation de l'azote
efficacité
inoculation
impact sur l'environnement
évaluation de l'impact
http://aims.fao.org/aos/agrovoc/c_42
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_24111
http://aims.fao.org/aos/agrovoc/c_34326
http://aims.fao.org/aos/agrovoc/c_6111
http://aims.fao.org/aos/agrovoc/c_6475
http://aims.fao.org/aos/agrovoc/c_27939
http://aims.fao.org/aos/agrovoc/c_5196
http://aims.fao.org/aos/agrovoc/c_2491
http://aims.fao.org/aos/agrovoc/c_3879
http://aims.fao.org/aos/agrovoc/c_24420
http://aims.fao.org/aos/agrovoc/c_37938
http://aims.fao.org/aos/agrovoc/c_6970
http://aims.fao.org/aos/agrovoc/c_4533
http://aims.fao.org/aos/agrovoc/c_714
Perrineau, Marie-Mathilde
Le Roux, Christine
Galiana, Antoine
Faye, Aliou
Duponnois, Robin
Goh, Doreen Kim Soh
Prin, Yves
Béna, Gilles
Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
description Introducing nitrogen-fixing bacteria as an inoculum in association with legume crops is a common practice in agriculture. However, the question of the evolution of these introduced microorganisms remains crucial, both in terms of microbial ecology and agronomy. We explored this question by analyzing the genetic and symbiotic evolution of two Bradyrhizobium strains inoculated on Acacia mangium in Malaysia and Senegal 15 and 5 years, respectively, after their introduction. Based on typing of several loci, we showed that these two strains, although closely related and originally sampled in Australia, evolved differently. One strain was recovered in soil with the same five loci as the original isolate, whereas the symbiotic cluster of the other strain was detected with no trace of the three housekeeping genes of the original inoculum. Moreover, the nitrogen fixation efficiency was variable among these isolates (either recombinant or not), with significantly high, low, or similar efficiencies compared to the two original strains and no significant difference between recombinant and nonrecombinant isolates. These data suggested that 15 years after their introduction, nitrogen-fixing bacteria remain in the soil but that closely related inoculant strains may not evolve in the same way, either genetically or symbiotically. In a context of increasing agronomical use of microbial inoculants (for biological control, nitrogen fixation, or plant growth promotion), this result feeds the debate on the consequences associated with such practices.
format article
topic_facet P34 - Biologie du sol
K01 - Foresterie - Considérations générales
Acacia mangium
Bradyrhizobium
écologie microbienne
génétique des populations
dynamique des populations
recombinaison
bactérie fixatrice de l'azote
Fixation de l'azote
efficacité
inoculation
impact sur l'environnement
évaluation de l'impact
http://aims.fao.org/aos/agrovoc/c_42
http://aims.fao.org/aos/agrovoc/c_27138
http://aims.fao.org/aos/agrovoc/c_24111
http://aims.fao.org/aos/agrovoc/c_34326
http://aims.fao.org/aos/agrovoc/c_6111
http://aims.fao.org/aos/agrovoc/c_6475
http://aims.fao.org/aos/agrovoc/c_27939
http://aims.fao.org/aos/agrovoc/c_5196
http://aims.fao.org/aos/agrovoc/c_2491
http://aims.fao.org/aos/agrovoc/c_3879
http://aims.fao.org/aos/agrovoc/c_24420
http://aims.fao.org/aos/agrovoc/c_37938
http://aims.fao.org/aos/agrovoc/c_6970
http://aims.fao.org/aos/agrovoc/c_4533
http://aims.fao.org/aos/agrovoc/c_714
author Perrineau, Marie-Mathilde
Le Roux, Christine
Galiana, Antoine
Faye, Aliou
Duponnois, Robin
Goh, Doreen Kim Soh
Prin, Yves
Béna, Gilles
author_facet Perrineau, Marie-Mathilde
Le Roux, Christine
Galiana, Antoine
Faye, Aliou
Duponnois, Robin
Goh, Doreen Kim Soh
Prin, Yves
Béna, Gilles
author_sort Perrineau, Marie-Mathilde
title Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
title_short Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
title_full Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
title_fullStr Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
title_full_unstemmed Differing courses of genetic evolution of Bradyrhizobium inoculants as revealed by long-term molecular tracing in Acacia mangium plantations
title_sort differing courses of genetic evolution of bradyrhizobium inoculants as revealed by long-term molecular tracing in acacia mangium plantations
url http://agritrop.cirad.fr/573815/
http://agritrop.cirad.fr/573815/1/document_573815.pdf
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