New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification
Newcastle disease (ND) is one of the most lethal diseases of poultry worldwide. It is caused by an avian paramyxovirus 1 that has high genomic diversity. In the framework of an international surveillance program launched in 2007, several thousand samples from domestic and wild birds in Africa were collected and analyzed. ND viruses (NDV) were detected and isolated in apparently healthy fowls and wild birds. However, two thirds of the isolates collected in this study were classified as virulent strains of NDV based on the molecular analysis of the fusion protein and experimental in vivo challenges with two representative isolates. Phylogenetic analysis based on the F and HN genes showed that isolates recovered from poultry in Mali and Ethiopia form new groups, herein proposed as genotypes XIV and sub-genotype VIf with reference to the new nomenclature described by Diel's group. In Madagascar, the circulation of NDV strains of genotype XI, originally reported elsewhere, is also confirmed. Full genome sequencing of five African isolates was generated and an extensive phylogeny reconstruction was carried out based on the nucleotide sequences. The evolutionary distances between groups and the specific amino acid signatures of each cluster allowed us to refine the genotype nomenclature.
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dig-cirad-fr-5713752024-01-28T21:44:11Z http://agritrop.cirad.fr/571375/ http://agritrop.cirad.fr/571375/ New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification. Servan de Almeida Renata, Hammoumi Saliha, Gil Patricia, Briand François-Xavier, Molia Sophie, Gaidet Nicolas, Cappelle Julien, Chevalier Véronique, Balança Gilles, Traoré Abdallah, Grillet Colette, Fridolin Maminiaina Olivier, Guendouz Samia, Dakouo Martin, Samake Kassim, Bezeid Ould El Mamy, Diarra Abbas, Chaka Hassen, Goutard Flavie, Thompson Peter, Martinez Dominique, Jestin Véronique, Albina Emmanuel. 2013. PloS One, 8 (10):e76413, 16 p.https://doi.org/10.1371/journal.pone.0076413 <https://doi.org/10.1371/journal.pone.0076413> New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification Servan de Almeida, Renata Hammoumi, Saliha Gil, Patricia Briand, François-Xavier Molia, Sophie Gaidet, Nicolas Cappelle, Julien Chevalier, Véronique Balança, Gilles Traoré, Abdallah Grillet, Colette Fridolin Maminiaina, Olivier Guendouz, Samia Dakouo, Martin Samake, Kassim Bezeid, Ould El Mamy Diarra, Abbas Chaka, Hassen Goutard, Flavie Thompson, Peter Martinez, Dominique Jestin, Véronique Albina, Emmanuel eng 2013 PloS One L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 Éthiopie Mali Madagascar Afrique http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 Newcastle disease (ND) is one of the most lethal diseases of poultry worldwide. It is caused by an avian paramyxovirus 1 that has high genomic diversity. In the framework of an international surveillance program launched in 2007, several thousand samples from domestic and wild birds in Africa were collected and analyzed. ND viruses (NDV) were detected and isolated in apparently healthy fowls and wild birds. However, two thirds of the isolates collected in this study were classified as virulent strains of NDV based on the molecular analysis of the fusion protein and experimental in vivo challenges with two representative isolates. Phylogenetic analysis based on the F and HN genes showed that isolates recovered from poultry in Mali and Ethiopia form new groups, herein proposed as genotypes XIV and sub-genotype VIf with reference to the new nomenclature described by Diel's group. In Madagascar, the circulation of NDV strains of genotype XI, originally reported elsewhere, is also confirmed. Full genome sequencing of five African isolates was generated and an extensive phylogeny reconstruction was carried out based on the nucleotide sequences. The evolutionary distances between groups and the specific amino acid signatures of each cluster allowed us to refine the genotype nomenclature. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/571375/1/document_571375.pdf application/pdf Cirad license info:eu-repo/semantics/openAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1371/journal.pone.0076413 10.1371/journal.pone.0076413 info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0076413 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1371/journal.pone.0076413 |
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L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 |
spellingShingle |
L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 Servan de Almeida, Renata Hammoumi, Saliha Gil, Patricia Briand, François-Xavier Molia, Sophie Gaidet, Nicolas Cappelle, Julien Chevalier, Véronique Balança, Gilles Traoré, Abdallah Grillet, Colette Fridolin Maminiaina, Olivier Guendouz, Samia Dakouo, Martin Samake, Kassim Bezeid, Ould El Mamy Diarra, Abbas Chaka, Hassen Goutard, Flavie Thompson, Peter Martinez, Dominique Jestin, Véronique Albina, Emmanuel New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
description |
Newcastle disease (ND) is one of the most lethal diseases of poultry worldwide. It is caused by an avian paramyxovirus 1 that has high genomic diversity. In the framework of an international surveillance program launched in 2007, several thousand samples from domestic and wild birds in Africa were collected and analyzed. ND viruses (NDV) were detected and isolated in apparently healthy fowls and wild birds. However, two thirds of the isolates collected in this study were classified as virulent strains of NDV based on the molecular analysis of the fusion protein and experimental in vivo challenges with two representative isolates. Phylogenetic analysis based on the F and HN genes showed that isolates recovered from poultry in Mali and Ethiopia form new groups, herein proposed as genotypes XIV and sub-genotype VIf with reference to the new nomenclature described by Diel's group. In Madagascar, the circulation of NDV strains of genotype XI, originally reported elsewhere, is also confirmed. Full genome sequencing of five African isolates was generated and an extensive phylogeny reconstruction was carried out based on the nucleotide sequences. The evolutionary distances between groups and the specific amino acid signatures of each cluster allowed us to refine the genotype nomenclature. |
format |
article |
topic_facet |
L73 - Maladies des animaux virus maladie de newcastle Paramyxoviridae surveillance épidémiologique phylogénie génotype séquence nucléotidique classification évolution provenance animal sauvage volaille oiseau Enquête pathologique http://aims.fao.org/aos/agrovoc/c_5166 http://aims.fao.org/aos/agrovoc/c_5567 http://aims.fao.org/aos/agrovoc/c_16411 http://aims.fao.org/aos/agrovoc/c_13325 http://aims.fao.org/aos/agrovoc/c_3225 http://aims.fao.org/aos/agrovoc/c_27583 http://aims.fao.org/aos/agrovoc/c_1653 http://aims.fao.org/aos/agrovoc/c_2745 http://aims.fao.org/aos/agrovoc/c_16022 http://aims.fao.org/aos/agrovoc/c_24103 http://aims.fao.org/aos/agrovoc/c_6145 http://aims.fao.org/aos/agrovoc/c_935 http://aims.fao.org/aos/agrovoc/c_28665 http://aims.fao.org/aos/agrovoc/c_2676 http://aims.fao.org/aos/agrovoc/c_4540 http://aims.fao.org/aos/agrovoc/c_4510 http://aims.fao.org/aos/agrovoc/c_165 |
author |
Servan de Almeida, Renata Hammoumi, Saliha Gil, Patricia Briand, François-Xavier Molia, Sophie Gaidet, Nicolas Cappelle, Julien Chevalier, Véronique Balança, Gilles Traoré, Abdallah Grillet, Colette Fridolin Maminiaina, Olivier Guendouz, Samia Dakouo, Martin Samake, Kassim Bezeid, Ould El Mamy Diarra, Abbas Chaka, Hassen Goutard, Flavie Thompson, Peter Martinez, Dominique Jestin, Véronique Albina, Emmanuel |
author_facet |
Servan de Almeida, Renata Hammoumi, Saliha Gil, Patricia Briand, François-Xavier Molia, Sophie Gaidet, Nicolas Cappelle, Julien Chevalier, Véronique Balança, Gilles Traoré, Abdallah Grillet, Colette Fridolin Maminiaina, Olivier Guendouz, Samia Dakouo, Martin Samake, Kassim Bezeid, Ould El Mamy Diarra, Abbas Chaka, Hassen Goutard, Flavie Thompson, Peter Martinez, Dominique Jestin, Véronique Albina, Emmanuel |
author_sort |
Servan de Almeida, Renata |
title |
New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
title_short |
New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
title_full |
New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
title_fullStr |
New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
title_full_unstemmed |
New avian paramyxoviruses type I strains identified in Africa provide new outcomes for phylogeny reconstruction and genotype classification |
title_sort |
new avian paramyxoviruses type i strains identified in africa provide new outcomes for phylogeny reconstruction and genotype classification |
url |
http://agritrop.cirad.fr/571375/ http://agritrop.cirad.fr/571375/1/document_571375.pdf |
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