Multivariate analyses in soil microbial ecology: A new paradigm
Mycorrhizal symbiosis is a key component of a sustainable soil-plant system, governing the cycles of major plant nutrients and vegetation cover. The mycorrhizosphere includes plants roots, the mycorrhizal fungi, and a complex microbial compartment. A large number of methods have been used to characterize the genetic and functional diversity of these soil microbial communities.We present here a review of the multivariate data analysis methods that have been used in 16 research articles published in the 2005-2009 period. "Descriptive" multivariate data analysis methods have been priviledged over classical "predictive" methods and univariate statistical tests. Data sets, multivariate data analysis methods, graphical outputs and interpretation results are presented and explained in details on several examples coming from some of the 16 articles. These multivariate and graphical methods are available in the ade4 package for the R statistical software. The discussion underlines the importance of using appropriate statistical methods to obtain a good description.
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dig-cirad-fr-5678532024-01-28T21:14:40Z http://agritrop.cirad.fr/567853/ http://agritrop.cirad.fr/567853/ Multivariate analyses in soil microbial ecology: A new paradigm. Thioulouse Jean, Prin Yves, Duponnois Robin. 2012. Environmental and Ecological Statistics, 19 (4) : 499-520.https://doi.org/10.1007/s10651-012-0198-z <https://doi.org/10.1007/s10651-012-0198-z> Multivariate analyses in soil microbial ecology: A new paradigm Thioulouse, Jean Prin, Yves Duponnois, Robin eng 2012 Environmental and Ecological Statistics P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 Mycorrhizal symbiosis is a key component of a sustainable soil-plant system, governing the cycles of major plant nutrients and vegetation cover. The mycorrhizosphere includes plants roots, the mycorrhizal fungi, and a complex microbial compartment. A large number of methods have been used to characterize the genetic and functional diversity of these soil microbial communities.We present here a review of the multivariate data analysis methods that have been used in 16 research articles published in the 2005-2009 period. "Descriptive" multivariate data analysis methods have been priviledged over classical "predictive" methods and univariate statistical tests. Data sets, multivariate data analysis methods, graphical outputs and interpretation results are presented and explained in details on several examples coming from some of the 16 articles. These multivariate and graphical methods are available in the ade4 package for the R statistical software. The discussion underlines the importance of using appropriate statistical methods to obtain a good description. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/567853/1/document_567853.pdf application/pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1007/s10651-012-0198-z 10.1007/s10651-012-0198-z info:eu-repo/semantics/altIdentifier/doi/10.1007/s10651-012-0198-z info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1007/s10651-012-0198-z |
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P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 |
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P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 Thioulouse, Jean Prin, Yves Duponnois, Robin Multivariate analyses in soil microbial ecology: A new paradigm |
description |
Mycorrhizal symbiosis is a key component of a sustainable soil-plant system, governing the cycles of major plant nutrients and vegetation cover. The mycorrhizosphere includes plants roots, the mycorrhizal fungi, and a complex microbial compartment. A large number of methods have been used to characterize the genetic and functional diversity of these soil microbial communities.We present here a review of the multivariate data analysis methods that have been used in 16 research articles published in the 2005-2009 period. "Descriptive" multivariate data analysis methods have been priviledged over classical "predictive" methods and univariate statistical tests. Data sets, multivariate data analysis methods, graphical outputs and interpretation results are presented and explained in details on several examples coming from some of the 16 articles. These multivariate and graphical methods are available in the ade4 package for the R statistical software. The discussion underlines the importance of using appropriate statistical methods to obtain a good description. |
format |
article |
topic_facet |
P34 - Biologie du sol P35 - Fertilité du sol P33 - Chimie et physique du sol symbiose Mycorhizé microbiologie micro-organisme du sol rhizosphère écologie microbienne biodiversité relation plante sol interactions biologiques méthode statistique couverture du sol fertilisation propriété physicochimique du sol fertilité du sol biologie du sol http://aims.fao.org/aos/agrovoc/c_7563 http://aims.fao.org/aos/agrovoc/c_5023 http://aims.fao.org/aos/agrovoc/c_4800 http://aims.fao.org/aos/agrovoc/c_36167 http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_24111 http://aims.fao.org/aos/agrovoc/c_33949 http://aims.fao.org/aos/agrovoc/c_16146 http://aims.fao.org/aos/agrovoc/c_49896 http://aims.fao.org/aos/agrovoc/c_7377 http://aims.fao.org/aos/agrovoc/c_37897 http://aims.fao.org/aos/agrovoc/c_10795 http://aims.fao.org/aos/agrovoc/c_7182 http://aims.fao.org/aos/agrovoc/c_7170 http://aims.fao.org/aos/agrovoc/c_7160 |
author |
Thioulouse, Jean Prin, Yves Duponnois, Robin |
author_facet |
Thioulouse, Jean Prin, Yves Duponnois, Robin |
author_sort |
Thioulouse, Jean |
title |
Multivariate analyses in soil microbial ecology: A new paradigm |
title_short |
Multivariate analyses in soil microbial ecology: A new paradigm |
title_full |
Multivariate analyses in soil microbial ecology: A new paradigm |
title_fullStr |
Multivariate analyses in soil microbial ecology: A new paradigm |
title_full_unstemmed |
Multivariate analyses in soil microbial ecology: A new paradigm |
title_sort |
multivariate analyses in soil microbial ecology: a new paradigm |
url |
http://agritrop.cirad.fr/567853/ http://agritrop.cirad.fr/567853/1/document_567853.pdf |
work_keys_str_mv |
AT thioulousejean multivariateanalysesinsoilmicrobialecologyanewparadigm AT prinyves multivariateanalysesinsoilmicrobialecologyanewparadigm AT duponnoisrobin multivariateanalysesinsoilmicrobialecologyanewparadigm |
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1792498413344915456 |