Modelling inter-individual variability in sugar beet populations

Modeling heterogeneity in field crops is a key issue for a better characterization of field production. This paper presents some experimental data on sugar beet illustrating this heterogeneity. Several sources of individual variability within plant populations are identified: namely, initial condition (seed biomass, emergence delay), genetic variability (including phyllochron) and environment (including spacing and competition). A mathematical framework is introduced to integrate the different sources of variability in plant growth models. It is based on the classical method of Taylor Series Expansion, which allows the propagation of uncertainty in the dynamic system of growth and the computation of the approximate means and standard deviations of the model outputs. The method is applied to the GreenLab model of plant growth and more specifically to sugar beet. It opens perspectives in order to assess the different sources of variability in plant populations and estimate their parameters from experimental data. However important issues like optimization of data collection and system identifiability have to be resolved first, since the uncertainty effects may be mixed in an inextricable way or may necessitate a too huge amount of experimental data for their estimation.

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Main Authors: De Reffye, Philippe, Lemaire, Sébastien, Srivastava, Nitish, Maupas, Fabienne, Cournède, Paul-Henry
Format: conference_item biblioteca
Language:eng
Published: IEEE Computer Society
Subjects:U10 - Informatique, mathématiques et statistiques, F62 - Physiologie végétale - Croissance et développement, F01 - Culture des plantes,
Online Access:http://agritrop.cirad.fr/556076/
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spelling dig-cirad-fr-5560762022-03-30T12:56:17Z http://agritrop.cirad.fr/556076/ http://agritrop.cirad.fr/556076/ Modelling inter-individual variability in sugar beet populations. De Reffye Philippe, Lemaire Sébastien, Srivastava Nitish, Maupas Fabienne, Cournède Paul-Henry. 2010. In : Plant growth modeling and applications. Proceedings PMA09 : The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Beijing, China, 9-13 November 2009. Li Baoguo (ed.), Jaeger Marc (ed.), Guo Yan (ed.). China Agricultural University, CIRAD. Los Alamitos : IEEE Computer Society, 270-276. ISBN 978-0-7695-3988-1 International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications (PMA09). 3, Pékin, Chine, 9 Novembre 2009/13 Novembre 2009. Researchers Modelling inter-individual variability in sugar beet populations De Reffye, Philippe Lemaire, Sébastien Srivastava, Nitish Maupas, Fabienne Cournède, Paul-Henry eng 2010 IEEE Computer Society Plant growth modeling and applications. Proceedings PMA09 : The Third International Symposium on Plant Growth Modeling, Simulation, Visualization and Applications, Beijing, China, 9-13 November 2009 U10 - Informatique, mathématiques et statistiques F62 - Physiologie végétale - Croissance et développement F01 - Culture des plantes Modeling heterogeneity in field crops is a key issue for a better characterization of field production. This paper presents some experimental data on sugar beet illustrating this heterogeneity. Several sources of individual variability within plant populations are identified: namely, initial condition (seed biomass, emergence delay), genetic variability (including phyllochron) and environment (including spacing and competition). A mathematical framework is introduced to integrate the different sources of variability in plant growth models. It is based on the classical method of Taylor Series Expansion, which allows the propagation of uncertainty in the dynamic system of growth and the computation of the approximate means and standard deviations of the model outputs. The method is applied to the GreenLab model of plant growth and more specifically to sugar beet. It opens perspectives in order to assess the different sources of variability in plant populations and estimate their parameters from experimental data. However important issues like optimization of data collection and system identifiability have to be resolved first, since the uncertainty effects may be mixed in an inextricable way or may necessitate a too huge amount of experimental data for their estimation. conference_item info:eu-repo/semantics/conferenceObject Conference info:eu-repo/semantics/closedAccess http://agritrop.cirad.fr/556027/
institution CIRAD FR
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-cirad-fr
tag biblioteca
region Europa del Oeste
libraryname Biblioteca del CIRAD Francia
language eng
topic U10 - Informatique, mathématiques et statistiques
F62 - Physiologie végétale - Croissance et développement
F01 - Culture des plantes
U10 - Informatique, mathématiques et statistiques
F62 - Physiologie végétale - Croissance et développement
F01 - Culture des plantes
spellingShingle U10 - Informatique, mathématiques et statistiques
F62 - Physiologie végétale - Croissance et développement
F01 - Culture des plantes
U10 - Informatique, mathématiques et statistiques
F62 - Physiologie végétale - Croissance et développement
F01 - Culture des plantes
De Reffye, Philippe
Lemaire, Sébastien
Srivastava, Nitish
Maupas, Fabienne
Cournède, Paul-Henry
Modelling inter-individual variability in sugar beet populations
description Modeling heterogeneity in field crops is a key issue for a better characterization of field production. This paper presents some experimental data on sugar beet illustrating this heterogeneity. Several sources of individual variability within plant populations are identified: namely, initial condition (seed biomass, emergence delay), genetic variability (including phyllochron) and environment (including spacing and competition). A mathematical framework is introduced to integrate the different sources of variability in plant growth models. It is based on the classical method of Taylor Series Expansion, which allows the propagation of uncertainty in the dynamic system of growth and the computation of the approximate means and standard deviations of the model outputs. The method is applied to the GreenLab model of plant growth and more specifically to sugar beet. It opens perspectives in order to assess the different sources of variability in plant populations and estimate their parameters from experimental data. However important issues like optimization of data collection and system identifiability have to be resolved first, since the uncertainty effects may be mixed in an inextricable way or may necessitate a too huge amount of experimental data for their estimation.
format conference_item
topic_facet U10 - Informatique, mathématiques et statistiques
F62 - Physiologie végétale - Croissance et développement
F01 - Culture des plantes
author De Reffye, Philippe
Lemaire, Sébastien
Srivastava, Nitish
Maupas, Fabienne
Cournède, Paul-Henry
author_facet De Reffye, Philippe
Lemaire, Sébastien
Srivastava, Nitish
Maupas, Fabienne
Cournède, Paul-Henry
author_sort De Reffye, Philippe
title Modelling inter-individual variability in sugar beet populations
title_short Modelling inter-individual variability in sugar beet populations
title_full Modelling inter-individual variability in sugar beet populations
title_fullStr Modelling inter-individual variability in sugar beet populations
title_full_unstemmed Modelling inter-individual variability in sugar beet populations
title_sort modelling inter-individual variability in sugar beet populations
publisher IEEE Computer Society
url http://agritrop.cirad.fr/556076/
work_keys_str_mv AT dereffyephilippe modellinginterindividualvariabilityinsugarbeetpopulations
AT lemairesebastien modellinginterindividualvariabilityinsugarbeetpopulations
AT srivastavanitish modellinginterindividualvariabilityinsugarbeetpopulations
AT maupasfabienne modellinginterindividualvariabilityinsugarbeetpopulations
AT cournedepaulhenry modellinginterindividualvariabilityinsugarbeetpopulations
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