Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa
Microsatellite markers of Crinipellis perniciosa, with three and four repeats, were developed from sequence database and evaluated for their usefulness in detecting genetic polymorphism. Thirty-three primers produced unambiguous amplification products of 28 microsatellite-containing loci and 14 microsatellite-like polymorphic loci, with two to seven alleles at each locus. Three loci were useful to distinguish isolates from different biotypes and isolates from different countries. Amplification of the markers in the closely related fungi Moniliophthora roreri indicates that their usefulness in population's studies may go beyond the present study of the C. perniciosa and may have applications in population genetics of M. roreri.
Main Authors: | , , , , |
---|---|
Format: | article biblioteca |
Language: | eng |
Subjects: | F30 - Génétique et amélioration des plantes, H20 - Maladies des plantes, Crinipellis perniciosa, microsatellite, identification, Theobroma cacao, Moniliophthora, polymorphisme génétique, locus, marqueur génétique, http://aims.fao.org/aos/agrovoc/c_33673, http://aims.fao.org/aos/agrovoc/c_36574, http://aims.fao.org/aos/agrovoc/c_3791, http://aims.fao.org/aos/agrovoc/c_7713, http://aims.fao.org/aos/agrovoc/c_31727, http://aims.fao.org/aos/agrovoc/c_24031, http://aims.fao.org/aos/agrovoc/c_24869, http://aims.fao.org/aos/agrovoc/c_24030, |
Online Access: | http://agritrop.cirad.fr/536386/ http://agritrop.cirad.fr/536386/1/document_536386.pdf |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
id |
dig-cirad-fr-536386 |
---|---|
record_format |
koha |
spelling |
dig-cirad-fr-5363862024-01-28T15:04:05Z http://agritrop.cirad.fr/536386/ http://agritrop.cirad.fr/536386/ Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa. Gramacho Karina Peres, Risterucci Ange-Marie, Lanaud Claire, Lima Leila S., Lopes Uilson Vanderlei. 2007. Molecular Ecology Notes, 7 (1) : 153-155.https://doi.org/10.1111/j.1471-8286.2006.01563.x <https://doi.org/10.1111/j.1471-8286.2006.01563.x> Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa Gramacho, Karina Peres Risterucci, Ange-Marie Lanaud, Claire Lima, Leila S. Lopes, Uilson Vanderlei eng 2007 Molecular Ecology Notes F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 Microsatellite markers of Crinipellis perniciosa, with three and four repeats, were developed from sequence database and evaluated for their usefulness in detecting genetic polymorphism. Thirty-three primers produced unambiguous amplification products of 28 microsatellite-containing loci and 14 microsatellite-like polymorphic loci, with two to seven alleles at each locus. Three loci were useful to distinguish isolates from different biotypes and isolates from different countries. Amplification of the markers in the closely related fungi Moniliophthora roreri indicates that their usefulness in population's studies may go beyond the present study of the C. perniciosa and may have applications in population genetics of M. roreri. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/536386/1/document_536386.pdf application/pdf Cirad license info:eu-repo/semantics/restrictedAccess https://agritrop.cirad.fr/mention_legale.html https://doi.org/10.1111/j.1471-8286.2006.01563.x 10.1111/j.1471-8286.2006.01563.x info:eu-repo/semantics/altIdentifier/doi/10.1111/j.1471-8286.2006.01563.x info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1111/j.1471-8286.2006.01563.x |
institution |
CIRAD FR |
collection |
DSpace |
country |
Francia |
countrycode |
FR |
component |
Bibliográfico |
access |
En linea |
databasecode |
dig-cirad-fr |
tag |
biblioteca |
region |
Europa del Oeste |
libraryname |
Biblioteca del CIRAD Francia |
language |
eng |
topic |
F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 |
spellingShingle |
F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 Gramacho, Karina Peres Risterucci, Ange-Marie Lanaud, Claire Lima, Leila S. Lopes, Uilson Vanderlei Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
description |
Microsatellite markers of Crinipellis perniciosa, with three and four repeats, were developed from sequence database and evaluated for their usefulness in detecting genetic polymorphism. Thirty-three primers produced unambiguous amplification products of 28 microsatellite-containing loci and 14 microsatellite-like polymorphic loci, with two to seven alleles at each locus. Three loci were useful to distinguish isolates from different biotypes and isolates from different countries. Amplification of the markers in the closely related fungi Moniliophthora roreri indicates that their usefulness in population's studies may go beyond the present study of the C. perniciosa and may have applications in population genetics of M. roreri. |
format |
article |
topic_facet |
F30 - Génétique et amélioration des plantes H20 - Maladies des plantes Crinipellis perniciosa microsatellite identification Theobroma cacao Moniliophthora polymorphisme génétique locus marqueur génétique http://aims.fao.org/aos/agrovoc/c_33673 http://aims.fao.org/aos/agrovoc/c_36574 http://aims.fao.org/aos/agrovoc/c_3791 http://aims.fao.org/aos/agrovoc/c_7713 http://aims.fao.org/aos/agrovoc/c_31727 http://aims.fao.org/aos/agrovoc/c_24031 http://aims.fao.org/aos/agrovoc/c_24869 http://aims.fao.org/aos/agrovoc/c_24030 |
author |
Gramacho, Karina Peres Risterucci, Ange-Marie Lanaud, Claire Lima, Leila S. Lopes, Uilson Vanderlei |
author_facet |
Gramacho, Karina Peres Risterucci, Ange-Marie Lanaud, Claire Lima, Leila S. Lopes, Uilson Vanderlei |
author_sort |
Gramacho, Karina Peres |
title |
Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
title_short |
Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
title_full |
Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
title_fullStr |
Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
title_full_unstemmed |
Characterization of microsatellites in the fungal plant pathogen Crinipellis perniciosa |
title_sort |
characterization of microsatellites in the fungal plant pathogen crinipellis perniciosa |
url |
http://agritrop.cirad.fr/536386/ http://agritrop.cirad.fr/536386/1/document_536386.pdf |
work_keys_str_mv |
AT gramachokarinaperes characterizationofmicrosatellitesinthefungalplantpathogencrinipellisperniciosa AT risterucciangemarie characterizationofmicrosatellitesinthefungalplantpathogencrinipellisperniciosa AT lanaudclaire characterizationofmicrosatellitesinthefungalplantpathogencrinipellisperniciosa AT limaleilas characterizationofmicrosatellitesinthefungalplantpathogencrinipellisperniciosa AT lopesuilsonvanderlei characterizationofmicrosatellitesinthefungalplantpathogencrinipellisperniciosa |
_version_ |
1792496615144030208 |