Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22

The identification of stable quantitative trait locus (QTL) for yield-related traits and tightly linked molecular markers is important for improving wheat grain yield. In the present study, six yield-related traits in a recombinant inbred line (RIL) population derived from the Zhongmai 578/Jimai 22 cross were phenotyped in five environments. The parents and 262 RILs were genotyped using the wheat 50K single nucleotide polymorphism (SNP) array. A high-density genetic map was constructed with 1 501 non-redundant bin markers, spanning 2 384.95 cM. Fifty-three QTLs for six yield-related traits were mapped on chromosomes 1D (2), 2A (9), 2B (6), 2D, 3A (2), 3B (2), 4A (5), 4D, 5B (8), 5D (2), 7A (7), 7B (3) and 7D (5), which explained 2.7-25.5% of the phenotypic variances. Among the 53 QTLs, 23 were detected in at least three environments, including seven for thousand-kernel weight (TKW), four for kernel length (KL), four for kernel width (KW), three for average grain filling rate (GFR), one for kernel number per spike (KNS) and four for plant height (PH). The stable QTLs QKl.caas-2A.1, QKl.caas-7D, QKw.caas-7D, QGfr.caas-2B.1, QGfr.caas-4A, QGfr.caas-7A and QPh. caas-2A.1 are likely to be new loci. Six QTL-rich regions on 2A, 2B, 4A, 5B, 7A and 7D, showed pleiotropic effects on various yield traits. TaSus2-2B and WAPO-A1 are potential candidate genes for the pleiotropic regions on 2B and 7A, respectively. The pleiotropic QTL on 7D for TKW, KL, KW and PH was verified in a natural population. The results of this study enrich our knowledge of the genetic basis underlying yield-related traits and provide molecular markers for high-yield wheat breeding.

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Main Authors: Dan Liu, Dehui Zhao, Jian qi Zeng, Rabiu Sani Shawai, Jingyang Tong, Ming Li, Fa-Ji Li, Shuo Zhou, Wen-li Hu, Xianchun Xia, Yubing Tian, Qian Zhu, Chunping Wang, Desen Wang, He Zhonghu, Jindong Liu, Yong Zhang
Format: Article biblioteca
Language:English
Published: Elsevier B.V. 2023
Subjects:AGRICULTURAL SCIENCES AND BIOTECHNOLOGY, Grain Yield, KASP Marker, QTL Mapping, SNP Chip, GRAIN, YIELDS, QUANTITATIVE TRAIT LOCI MAPPING, SINGLE NUCLEOTIDE POLYMORPHISMS, WHEAT, BREEDING, Wheat,
Online Access:https://hdl.handle.net/10883/22710
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spelling dig-cimmyt-10883-227102023-09-28T09:00:22Z Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22 Dan Liu Dehui Zhao Jian qi Zeng Rabiu Sani Shawai Jingyang Tong Ming Li Fa-Ji Li Shuo Zhou Wen-li Hu Xianchun Xia Yubing Tian Qian Zhu Chunping Wang Desen Wang He Zhonghu Jindong Liu Yong Zhang AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Grain Yield KASP Marker QTL Mapping SNP Chip GRAIN YIELDS QUANTITATIVE TRAIT LOCI MAPPING SINGLE NUCLEOTIDE POLYMORPHISMS WHEAT BREEDING Wheat The identification of stable quantitative trait locus (QTL) for yield-related traits and tightly linked molecular markers is important for improving wheat grain yield. In the present study, six yield-related traits in a recombinant inbred line (RIL) population derived from the Zhongmai 578/Jimai 22 cross were phenotyped in five environments. The parents and 262 RILs were genotyped using the wheat 50K single nucleotide polymorphism (SNP) array. A high-density genetic map was constructed with 1 501 non-redundant bin markers, spanning 2 384.95 cM. Fifty-three QTLs for six yield-related traits were mapped on chromosomes 1D (2), 2A (9), 2B (6), 2D, 3A (2), 3B (2), 4A (5), 4D, 5B (8), 5D (2), 7A (7), 7B (3) and 7D (5), which explained 2.7-25.5% of the phenotypic variances. Among the 53 QTLs, 23 were detected in at least three environments, including seven for thousand-kernel weight (TKW), four for kernel length (KL), four for kernel width (KW), three for average grain filling rate (GFR), one for kernel number per spike (KNS) and four for plant height (PH). The stable QTLs QKl.caas-2A.1, QKl.caas-7D, QKw.caas-7D, QGfr.caas-2B.1, QGfr.caas-4A, QGfr.caas-7A and QPh. caas-2A.1 are likely to be new loci. Six QTL-rich regions on 2A, 2B, 4A, 5B, 7A and 7D, showed pleiotropic effects on various yield traits. TaSus2-2B and WAPO-A1 are potential candidate genes for the pleiotropic regions on 2B and 7A, respectively. The pleiotropic QTL on 7D for TKW, KL, KW and PH was verified in a natural population. The results of this study enrich our knowledge of the genetic basis underlying yield-related traits and provide molecular markers for high-yield wheat breeding. 1985-1999 2023-09-27T00:20:14Z 2023-09-27T00:20:14Z 2023 Article Published Version https://hdl.handle.net/10883/22710 10.1016/j.jia.2022.12.002 English CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose Open Access Netherlands Elsevier B.V. 7 22 2095-3119 Journal of Integrative Agriculture
institution CIMMYT
collection DSpace
country México
countrycode MX
component Bibliográfico
access En linea
databasecode dig-cimmyt
tag biblioteca
region America del Norte
libraryname CIMMYT Library
language English
topic AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Grain Yield
KASP Marker
QTL Mapping
SNP Chip
GRAIN
YIELDS
QUANTITATIVE TRAIT LOCI MAPPING
SINGLE NUCLEOTIDE POLYMORPHISMS
WHEAT
BREEDING
Wheat
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Grain Yield
KASP Marker
QTL Mapping
SNP Chip
GRAIN
YIELDS
QUANTITATIVE TRAIT LOCI MAPPING
SINGLE NUCLEOTIDE POLYMORPHISMS
WHEAT
BREEDING
Wheat
spellingShingle AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Grain Yield
KASP Marker
QTL Mapping
SNP Chip
GRAIN
YIELDS
QUANTITATIVE TRAIT LOCI MAPPING
SINGLE NUCLEOTIDE POLYMORPHISMS
WHEAT
BREEDING
Wheat
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Grain Yield
KASP Marker
QTL Mapping
SNP Chip
GRAIN
YIELDS
QUANTITATIVE TRAIT LOCI MAPPING
SINGLE NUCLEOTIDE POLYMORPHISMS
WHEAT
BREEDING
Wheat
Dan Liu
Dehui Zhao
Jian qi Zeng
Rabiu Sani Shawai
Jingyang Tong
Ming Li
Fa-Ji Li
Shuo Zhou
Wen-li Hu
Xianchun Xia
Yubing Tian
Qian Zhu
Chunping Wang
Desen Wang
He Zhonghu
Jindong Liu
Yong Zhang
Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
description The identification of stable quantitative trait locus (QTL) for yield-related traits and tightly linked molecular markers is important for improving wheat grain yield. In the present study, six yield-related traits in a recombinant inbred line (RIL) population derived from the Zhongmai 578/Jimai 22 cross were phenotyped in five environments. The parents and 262 RILs were genotyped using the wheat 50K single nucleotide polymorphism (SNP) array. A high-density genetic map was constructed with 1 501 non-redundant bin markers, spanning 2 384.95 cM. Fifty-three QTLs for six yield-related traits were mapped on chromosomes 1D (2), 2A (9), 2B (6), 2D, 3A (2), 3B (2), 4A (5), 4D, 5B (8), 5D (2), 7A (7), 7B (3) and 7D (5), which explained 2.7-25.5% of the phenotypic variances. Among the 53 QTLs, 23 were detected in at least three environments, including seven for thousand-kernel weight (TKW), four for kernel length (KL), four for kernel width (KW), three for average grain filling rate (GFR), one for kernel number per spike (KNS) and four for plant height (PH). The stable QTLs QKl.caas-2A.1, QKl.caas-7D, QKw.caas-7D, QGfr.caas-2B.1, QGfr.caas-4A, QGfr.caas-7A and QPh. caas-2A.1 are likely to be new loci. Six QTL-rich regions on 2A, 2B, 4A, 5B, 7A and 7D, showed pleiotropic effects on various yield traits. TaSus2-2B and WAPO-A1 are potential candidate genes for the pleiotropic regions on 2B and 7A, respectively. The pleiotropic QTL on 7D for TKW, KL, KW and PH was verified in a natural population. The results of this study enrich our knowledge of the genetic basis underlying yield-related traits and provide molecular markers for high-yield wheat breeding.
format Article
topic_facet AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Grain Yield
KASP Marker
QTL Mapping
SNP Chip
GRAIN
YIELDS
QUANTITATIVE TRAIT LOCI MAPPING
SINGLE NUCLEOTIDE POLYMORPHISMS
WHEAT
BREEDING
Wheat
author Dan Liu
Dehui Zhao
Jian qi Zeng
Rabiu Sani Shawai
Jingyang Tong
Ming Li
Fa-Ji Li
Shuo Zhou
Wen-li Hu
Xianchun Xia
Yubing Tian
Qian Zhu
Chunping Wang
Desen Wang
He Zhonghu
Jindong Liu
Yong Zhang
author_facet Dan Liu
Dehui Zhao
Jian qi Zeng
Rabiu Sani Shawai
Jingyang Tong
Ming Li
Fa-Ji Li
Shuo Zhou
Wen-li Hu
Xianchun Xia
Yubing Tian
Qian Zhu
Chunping Wang
Desen Wang
He Zhonghu
Jindong Liu
Yong Zhang
author_sort Dan Liu
title Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
title_short Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
title_full Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
title_fullStr Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
title_full_unstemmed Identification of genetic loci for grain yield-related traits in the wheat population Zhongmai 578/Jimai 22
title_sort identification of genetic loci for grain yield-related traits in the wheat population zhongmai 578/jimai 22
publisher Elsevier B.V.
publishDate 2023
url https://hdl.handle.net/10883/22710
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