High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants.
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BioMed Central
2018
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Subjects: | AGRICULTURAL SCIENCES AND BIOTECHNOLOGY, Ear, Phenotyping, MAIZE, KERNELS, IMAGE ANALYSIS, PHENOTYPES, |
Online Access: | https://hdl.handle.net/10883/19528 |
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dig-cimmyt-10883-195282023-10-23T14:17:08Z High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging Makanza, R. Zaman-Allah, M. Cairns, J.E. Eyre, J. Burgueño, J. Pacheco Gil, R.A. Diepenbrock, C. Magorokosho, C. Amsal Tesfaye Tarekegne Olsen, M. Prasanna, B.M. AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants. 2018-06-29T20:59:02Z 2018-06-29T20:59:02Z 2018 Article https://hdl.handle.net/10883/19528 10.1186/s13007-018-0317-4 English http://hdl.handle.net/11529/10201 CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose. Open Access PDF United Kingdom BioMed Central art. 49 14 Plant Methods |
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AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES |
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AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES Makanza, R. Zaman-Allah, M. Cairns, J.E. Eyre, J. Burgueño, J. Pacheco Gil, R.A. Diepenbrock, C. Magorokosho, C. Amsal Tesfaye Tarekegne Olsen, M. Prasanna, B.M. High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
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Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants. |
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Article |
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AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES |
author |
Makanza, R. Zaman-Allah, M. Cairns, J.E. Eyre, J. Burgueño, J. Pacheco Gil, R.A. Diepenbrock, C. Magorokosho, C. Amsal Tesfaye Tarekegne Olsen, M. Prasanna, B.M. |
author_facet |
Makanza, R. Zaman-Allah, M. Cairns, J.E. Eyre, J. Burgueño, J. Pacheco Gil, R.A. Diepenbrock, C. Magorokosho, C. Amsal Tesfaye Tarekegne Olsen, M. Prasanna, B.M. |
author_sort |
Makanza, R. |
title |
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
title_short |
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
title_full |
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
title_fullStr |
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
title_full_unstemmed |
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
title_sort |
high-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging |
publisher |
BioMed Central |
publishDate |
2018 |
url |
https://hdl.handle.net/10883/19528 |
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