High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging

Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants.

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Main Authors: Makanza, R., Zaman-Allah, M., Cairns, J.E., Eyre, J., Burgueño, J., Pacheco Gil, R.A., Diepenbrock, C., Magorokosho, C., Amsal Tesfaye Tarekegne, Olsen, M., Prasanna, B.M.
Format: Article biblioteca
Language:English
Published: BioMed Central 2018
Subjects:AGRICULTURAL SCIENCES AND BIOTECHNOLOGY, Ear, Phenotyping, MAIZE, KERNELS, IMAGE ANALYSIS, PHENOTYPES,
Online Access:https://hdl.handle.net/10883/19528
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spelling dig-cimmyt-10883-195282023-10-23T14:17:08Z High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging Makanza, R. Zaman-Allah, M. Cairns, J.E. Eyre, J. Burgueño, J. Pacheco Gil, R.A. Diepenbrock, C. Magorokosho, C. Amsal Tesfaye Tarekegne Olsen, M. Prasanna, B.M. AGRICULTURAL SCIENCES AND BIOTECHNOLOGY Ear Phenotyping MAIZE KERNELS IMAGE ANALYSIS PHENOTYPES Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants. 2018-06-29T20:59:02Z 2018-06-29T20:59:02Z 2018 Article https://hdl.handle.net/10883/19528 10.1186/s13007-018-0317-4 English http://hdl.handle.net/11529/10201 CIMMYT manages Intellectual Assets as International Public Goods. The user is free to download, print, store and share this work. In case you want to translate or create any other derivative work and share or distribute such translation/derivative work, please contact CIMMYT-Knowledge-Center@cgiar.org indicating the work you want to use and the kind of use you intend; CIMMYT will contact you with the suitable license for that purpose. Open Access PDF United Kingdom BioMed Central art. 49 14 Plant Methods
institution CIMMYT
collection DSpace
country México
countrycode MX
component Bibliográfico
access En linea
databasecode dig-cimmyt
tag biblioteca
region America del Norte
libraryname CIMMYT Library
language English
topic AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Ear
Phenotyping
MAIZE
KERNELS
IMAGE ANALYSIS
PHENOTYPES
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Ear
Phenotyping
MAIZE
KERNELS
IMAGE ANALYSIS
PHENOTYPES
spellingShingle AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Ear
Phenotyping
MAIZE
KERNELS
IMAGE ANALYSIS
PHENOTYPES
AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Ear
Phenotyping
MAIZE
KERNELS
IMAGE ANALYSIS
PHENOTYPES
Makanza, R.
Zaman-Allah, M.
Cairns, J.E.
Eyre, J.
Burgueño, J.
Pacheco Gil, R.A.
Diepenbrock, C.
Magorokosho, C.
Amsal Tesfaye Tarekegne
Olsen, M.
Prasanna, B.M.
High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
description Background: Grain yield, ear and kernel attributes can assist to understand the performance of maize plant under different environmental conditions and can be used in the variety development process to address farmer's preferences. These parameters are however still laborious and expensive to measure. Results: A low-cost ear digital imaging method was developed that provides estimates of ear and kernel attributes i.e., ear number and size, kernel number and size as well as kernel weight from photos of ears harvested from field trial plots. The image processing method uses a script that runs in a batch mode on ImageJ; an open source software. Kernel weight was estimated using the total kernel number derived from the number of kernels visible on the image and the average kernel size. Data showed a good agreement in terms of accuracy and precision between ground truth measurements and data generated through image processing. Broad-sense heritability of the estimated parameters was in the range or higher than that for measured grain weight. Limitation of the method for kernel weight estimation is discussed. Conclusion: The method developed in this work provides an opportunity to significantly reduce the cost of selection in the breeding process, especially for resource constrained crop improvement programs and can be used to learn more about the genetic bases of grain yield determinants.
format Article
topic_facet AGRICULTURAL SCIENCES AND BIOTECHNOLOGY
Ear
Phenotyping
MAIZE
KERNELS
IMAGE ANALYSIS
PHENOTYPES
author Makanza, R.
Zaman-Allah, M.
Cairns, J.E.
Eyre, J.
Burgueño, J.
Pacheco Gil, R.A.
Diepenbrock, C.
Magorokosho, C.
Amsal Tesfaye Tarekegne
Olsen, M.
Prasanna, B.M.
author_facet Makanza, R.
Zaman-Allah, M.
Cairns, J.E.
Eyre, J.
Burgueño, J.
Pacheco Gil, R.A.
Diepenbrock, C.
Magorokosho, C.
Amsal Tesfaye Tarekegne
Olsen, M.
Prasanna, B.M.
author_sort Makanza, R.
title High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_short High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_full High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_fullStr High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_full_unstemmed High-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
title_sort high-throughput method for ear phenotyping and kernel weight estimation in maize using ear digital imaging
publisher BioMed Central
publishDate 2018
url https://hdl.handle.net/10883/19528
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