Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)

In sturgeon aquaculture, where the main purpose is caviar production, a reliable method is needed to separate fish according to gender. Currently, due to the lack of external sexual dimorphism, the fish are sexed by an invasive surgical examination of the gonads. Development of a non-invasive procedure for sexing fish based on genetic markers is of special interest. In the present study we employed Bulked Segregant Analysis (BSA) methodology to search for DNA markers associated with the sex of the beluga sturgeon (Huso huso). DNA bulks (male and female) were created by combining equal amounts of genomic DNA from 10 fish of both sexes. A total of 101 decamer primers associated with the sex-specific sequences in non-sturgeon species was used for targeted screening of the bulks, resulting in 2846 bands that all of them were present in both sexes. Our results showed that sex chromosomes are weakly differentiated in the sturgeon genome and comprised sequences not complementary to the sex-specific primers in non-sturgeon species.

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Bibliographic Details
Main Authors: Khodaparast, M., Keyvanshokooh, S., Pourkazemi, M., Hosseini, S.J., Zolgharnein, H.
Format: article biblioteca
Language:English
Published: 2014
Subjects:Biology, Fisheries, genome, beluga, huso huso, sex, markers, segregant, DNA, species, Iran,
Online Access:http://hdl.handle.net/1834/36563
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spelling dig-aquadocs-1834-365632021-06-30T02:15:04Z Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA) Khodaparast, M. Keyvanshokooh, S. Pourkazemi, M. Hosseini, S.J. Zolgharnein, H. Biology Fisheries genome beluga huso huso sex markers segregant DNA species Iran In sturgeon aquaculture, where the main purpose is caviar production, a reliable method is needed to separate fish according to gender. Currently, due to the lack of external sexual dimorphism, the fish are sexed by an invasive surgical examination of the gonads. Development of a non-invasive procedure for sexing fish based on genetic markers is of special interest. In the present study we employed Bulked Segregant Analysis (BSA) methodology to search for DNA markers associated with the sex of the beluga sturgeon (Huso huso). DNA bulks (male and female) were created by combining equal amounts of genomic DNA from 10 fish of both sexes. A total of 101 decamer primers associated with the sex-specific sequences in non-sturgeon species was used for targeted screening of the bulks, resulting in 2846 bands that all of them were present in both sexes. Our results showed that sex chromosomes are weakly differentiated in the sturgeon genome and comprised sequences not complementary to the sex-specific primers in non-sturgeon species. 2021-06-24T17:59:27Z 2021-06-24T17:59:27Z 2014 article TRUE 1735-3033 http://hdl.handle.net/1834/36563 en http://cjes.guilan.ac.ir/ application/pdf application/pdf 185-195 http://aquaticcommons.org/id/eprint/21740 18721 2017-11-28 09:11:49 21740 University of Guilan, Faculty of Natural Resources, Iran
institution UNESCO
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-aquadocs
tag biblioteca
region Europa del Oeste
libraryname Repositorio AQUADOCS
language English
topic Biology
Fisheries
genome
beluga
huso huso
sex
markers
segregant
DNA
species
Iran
Biology
Fisheries
genome
beluga
huso huso
sex
markers
segregant
DNA
species
Iran
spellingShingle Biology
Fisheries
genome
beluga
huso huso
sex
markers
segregant
DNA
species
Iran
Biology
Fisheries
genome
beluga
huso huso
sex
markers
segregant
DNA
species
Iran
Khodaparast, M.
Keyvanshokooh, S.
Pourkazemi, M.
Hosseini, S.J.
Zolgharnein, H.
Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
description In sturgeon aquaculture, where the main purpose is caviar production, a reliable method is needed to separate fish according to gender. Currently, due to the lack of external sexual dimorphism, the fish are sexed by an invasive surgical examination of the gonads. Development of a non-invasive procedure for sexing fish based on genetic markers is of special interest. In the present study we employed Bulked Segregant Analysis (BSA) methodology to search for DNA markers associated with the sex of the beluga sturgeon (Huso huso). DNA bulks (male and female) were created by combining equal amounts of genomic DNA from 10 fish of both sexes. A total of 101 decamer primers associated with the sex-specific sequences in non-sturgeon species was used for targeted screening of the bulks, resulting in 2846 bands that all of them were present in both sexes. Our results showed that sex chromosomes are weakly differentiated in the sturgeon genome and comprised sequences not complementary to the sex-specific primers in non-sturgeon species.
format article
topic_facet Biology
Fisheries
genome
beluga
huso huso
sex
markers
segregant
DNA
species
Iran
author Khodaparast, M.
Keyvanshokooh, S.
Pourkazemi, M.
Hosseini, S.J.
Zolgharnein, H.
author_facet Khodaparast, M.
Keyvanshokooh, S.
Pourkazemi, M.
Hosseini, S.J.
Zolgharnein, H.
author_sort Khodaparast, M.
title Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
title_short Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
title_full Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
title_fullStr Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
title_full_unstemmed Searching the genome of beluga (Huso huso) for sex markers based on targeted bulked segregant analysis (BSA)
title_sort searching the genome of beluga (huso huso) for sex markers based on targeted bulked segregant analysis (bsa)
publishDate 2014
url http://hdl.handle.net/1834/36563
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