Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea

A total of 120 samples of adult common Kilka fish (Clupeonella cultriventris) were collected during spring and summer from the southern coasts of Caspian Sea (Bandar Anzali and Babolsar). Fifteen sets of microsatellite primers were developed from Clupeidae being tested on genomic DNA of common Kilka. Allele frequency, observed and expected heterozygosity, FST, RST, FIS index were determined. Five primer sets as polymorphic loci were used to analyze the genetic variation in adults of the common Kilka population. Results revealed that average alleles per locus was 13.1 (range 5 to 22 alleles per locus in regions, Ne=9.5). All sampled regions contained private alleles. Average observed and expected heterozygosity was 0.348 and 0.877, respectively. Deviations from HardyWeinberg equilibrium were observed in most cases. FST, RST and gene flow estimates in AMOVA and the genetic distance between populations indicated that the genetic difference among the studied populations was pronounced. The data generated in this study provide primary information on the genetic variation and differentiation in populations of Caspian common Kilka.

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Bibliographic Details
Main Authors: Norouzi, M., Nazemi, A., Pourkazemi, M., Samiei, M.H., Daneshvar, F., Amirjanati, A.
Format: Journal Contribution biblioteca
Language:English
Published: 2013
Subjects:Clupeidae, Kilka, Clupeonella cultriventris, Population, Genetic, Microsatellite, Fish, DNA,
Online Access:http://hdl.handle.net/1834/10700
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spelling dig-aquadocs-1834-107002021-05-19T06:44:54Z Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea Norouzi, M. Nazemi, A. Pourkazemi, M. Samiei, M.H. Daneshvar, F. Amirjanati, A. Clupeidae Kilka Clupeonella cultriventris Population Genetic Microsatellite Fish DNA A total of 120 samples of adult common Kilka fish (Clupeonella cultriventris) were collected during spring and summer from the southern coasts of Caspian Sea (Bandar Anzali and Babolsar). Fifteen sets of microsatellite primers were developed from Clupeidae being tested on genomic DNA of common Kilka. Allele frequency, observed and expected heterozygosity, FST, RST, FIS index were determined. Five primer sets as polymorphic loci were used to analyze the genetic variation in adults of the common Kilka population. Results revealed that average alleles per locus was 13.1 (range 5 to 22 alleles per locus in regions, Ne=9.5). All sampled regions contained private alleles. Average observed and expected heterozygosity was 0.348 and 0.877, respectively. Deviations from HardyWeinberg equilibrium were observed in most cases. FST, RST and gene flow estimates in AMOVA and the genetic distance between populations indicated that the genetic difference among the studied populations was pronounced. The data generated in this study provide primary information on the genetic variation and differentiation in populations of Caspian common Kilka. Published 2017-12-01T17:58:43Z 2017-12-01T17:58:43Z 2013 Journal Contribution Refereed 1026-1354 http://hdl.handle.net/1834/10700 en pp.139-148 Iran Caspian Sea
institution UNESCO
collection DSpace
country Francia
countrycode FR
component Bibliográfico
access En linea
databasecode dig-aquadocs
tag biblioteca
region Europa del Oeste
libraryname Repositorio AQUADOCS
language English
topic Clupeidae
Kilka
Clupeonella cultriventris
Population
Genetic
Microsatellite
Fish
DNA
Clupeidae
Kilka
Clupeonella cultriventris
Population
Genetic
Microsatellite
Fish
DNA
spellingShingle Clupeidae
Kilka
Clupeonella cultriventris
Population
Genetic
Microsatellite
Fish
DNA
Clupeidae
Kilka
Clupeonella cultriventris
Population
Genetic
Microsatellite
Fish
DNA
Norouzi, M.
Nazemi, A.
Pourkazemi, M.
Samiei, M.H.
Daneshvar, F.
Amirjanati, A.
Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
description A total of 120 samples of adult common Kilka fish (Clupeonella cultriventris) were collected during spring and summer from the southern coasts of Caspian Sea (Bandar Anzali and Babolsar). Fifteen sets of microsatellite primers were developed from Clupeidae being tested on genomic DNA of common Kilka. Allele frequency, observed and expected heterozygosity, FST, RST, FIS index were determined. Five primer sets as polymorphic loci were used to analyze the genetic variation in adults of the common Kilka population. Results revealed that average alleles per locus was 13.1 (range 5 to 22 alleles per locus in regions, Ne=9.5). All sampled regions contained private alleles. Average observed and expected heterozygosity was 0.348 and 0.877, respectively. Deviations from HardyWeinberg equilibrium were observed in most cases. FST, RST and gene flow estimates in AMOVA and the genetic distance between populations indicated that the genetic difference among the studied populations was pronounced. The data generated in this study provide primary information on the genetic variation and differentiation in populations of Caspian common Kilka.
format Journal Contribution
topic_facet Clupeidae
Kilka
Clupeonella cultriventris
Population
Genetic
Microsatellite
Fish
DNA
author Norouzi, M.
Nazemi, A.
Pourkazemi, M.
Samiei, M.H.
Daneshvar, F.
Amirjanati, A.
author_facet Norouzi, M.
Nazemi, A.
Pourkazemi, M.
Samiei, M.H.
Daneshvar, F.
Amirjanati, A.
author_sort Norouzi, M.
title Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
title_short Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
title_full Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
title_fullStr Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
title_full_unstemmed Genetic variability and differentiation of common Kilka fish (Clupeonella cultriventris Nordmann, 1840) in the southern coasts of Caspian Sea
title_sort genetic variability and differentiation of common kilka fish (clupeonella cultriventris nordmann, 1840) in the southern coasts of caspian sea
publishDate 2013
url http://hdl.handle.net/1834/10700
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