Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine.
A genetic linkage map was constructed using a pseudo-testcross strategy based on a cross between the seedless Vitis vinifera ?Crimson Seedless? and the complex hybrid ?Villard Blanc?, resistant to downy mildew. A total of 315 DNA markers, including 262 AFLP, 48 simple sequence repeats (SSR), 2 SCARs (sequence characterized amplified region) and 3 minisatellite markers were used to generate a map for each parent. For both parents, 19 linkage groups were obtained, covering 1,111.0 cM and 926.0 cM for ?Villard Blanc? and ?Crimson Seedless?, respectively. The position of SSR loci in the obtained maps is consistent with the genomic sequence. Quantitative Trait Loci (QTLs) for seedlessness and resistance to downy mildew were investigated. Two major effect QTLs for downy mildew resistance and seedlessness were mapped on the same region of linkage group 18. These QTLs explain 25.0-55.7% and 54.0-62.,4% of the total variance, respectively. The MIKCC-Type MADS box gene VvAG3, whose orthologue is involved in Arabidopsis carpel and ovule development, and located in the confidence interval of the seedlessness QTL detected on the LG 18, could be considered as a candidate gene to control seed development in grape. Co-localizations were found in the same region, between the position of the Rpv3 locus, which is very rich in TIR-NBS-LRR genes, and the main QTL identified for downy mildew resistance. Our results demonstrate that the same region of LG 18 contains important genetic determinants for seedlessness and downy mildew resistance in grapevine. Moreover, assessing the allelic variation at these agronomically important loci provides a basis for the development of marker-assisted selection for seedlessness and downy mildew simultaneously.
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Language: | English eng |
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2010-10-28
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Subjects: | Sequenciamento genético, Apirenia, Mapeamento genético, Viticultura, Uva, Doença de planta, Fungo, Míldio, Biologia molecular, Variedade resistente, |
Online Access: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/865515 |
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dig-alice-doc-8655152019-04-04T00:32:06Z Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. REVERS, L. F. SILVA, D. C. da LAMPE, V. S. OLIVEIRA, P. R. D. de GARRIDO, L. da R. WELTER, L. J. IRALA, P. B. LUIS FERNANDO REVERS, CNPUV; D. COSTENARO DA SILVA, CNPUV (bolsista); V. S. LAMPE, CNPUV (bolsista); PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; LUCAS DA RESSURREICAO GARRIDO, CNPUV; L. J. WELTER, UNIVERSIDADE FEDERAL DO PAMPA; P. B. IRALA, PROFIGEN DO BRASIL. Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente A genetic linkage map was constructed using a pseudo-testcross strategy based on a cross between the seedless Vitis vinifera ?Crimson Seedless? and the complex hybrid ?Villard Blanc?, resistant to downy mildew. A total of 315 DNA markers, including 262 AFLP, 48 simple sequence repeats (SSR), 2 SCARs (sequence characterized amplified region) and 3 minisatellite markers were used to generate a map for each parent. For both parents, 19 linkage groups were obtained, covering 1,111.0 cM and 926.0 cM for ?Villard Blanc? and ?Crimson Seedless?, respectively. The position of SSR loci in the obtained maps is consistent with the genomic sequence. Quantitative Trait Loci (QTLs) for seedlessness and resistance to downy mildew were investigated. Two major effect QTLs for downy mildew resistance and seedlessness were mapped on the same region of linkage group 18. These QTLs explain 25.0-55.7% and 54.0-62.,4% of the total variance, respectively. The MIKCC-Type MADS box gene VvAG3, whose orthologue is involved in Arabidopsis carpel and ovule development, and located in the confidence interval of the seedlessness QTL detected on the LG 18, could be considered as a candidate gene to control seed development in grape. Co-localizations were found in the same region, between the position of the Rpv3 locus, which is very rich in TIR-NBS-LRR genes, and the main QTL identified for downy mildew resistance. Our results demonstrate that the same region of LG 18 contains important genetic determinants for seedlessness and downy mildew resistance in grapevine. Moreover, assessing the allelic variation at these agronomically important loci provides a basis for the development of marker-assisted selection for seedlessness and downy mildew simultaneously. Resumo O-38. 2019-04-04T00:32:00Z 2019-04-04T00:32:00Z 2010-10-28 2010 2019-10-25T11:11:11Z Separatas In: INTERNATIONAL CONFERENCE ON GRAPEVINE BREEDING AND GENETICS, 10., 2010, Geneva. Program and abstracts. [S.l.]: ISHS: Cornell University: USDA, [2010]. http://www.alice.cnptia.embrapa.br/alice/handle/doc/865515 en eng openAccess p. 58. |
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Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente |
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Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente REVERS, L. F. SILVA, D. C. da LAMPE, V. S. OLIVEIRA, P. R. D. de GARRIDO, L. da R. WELTER, L. J. IRALA, P. B. Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
description |
A genetic linkage map was constructed using a pseudo-testcross strategy based on a cross between the seedless Vitis vinifera ?Crimson Seedless? and the complex hybrid ?Villard Blanc?, resistant to downy mildew. A total of 315 DNA markers, including 262 AFLP, 48 simple sequence repeats (SSR), 2 SCARs (sequence characterized amplified region) and 3 minisatellite markers were used to generate a map for each parent. For both parents, 19 linkage groups were obtained, covering 1,111.0 cM and 926.0 cM for ?Villard Blanc? and ?Crimson Seedless?, respectively. The position of SSR loci in the obtained maps is consistent with the genomic sequence. Quantitative Trait Loci (QTLs) for seedlessness and resistance to downy mildew were investigated. Two major effect QTLs for downy mildew resistance and seedlessness were mapped on the same region of linkage group 18. These QTLs explain 25.0-55.7% and 54.0-62.,4% of the total variance, respectively. The MIKCC-Type MADS box gene VvAG3, whose orthologue is involved in Arabidopsis carpel and ovule development, and located in the confidence interval of the seedlessness QTL detected on the LG 18, could be considered as a candidate gene to control seed development in grape. Co-localizations were found in the same region, between the position of the Rpv3 locus, which is very rich in TIR-NBS-LRR genes, and the main QTL identified for downy mildew resistance. Our results demonstrate that the same region of LG 18 contains important genetic determinants for seedlessness and downy mildew resistance in grapevine. Moreover, assessing the allelic variation at these agronomically important loci provides a basis for the development of marker-assisted selection for seedlessness and downy mildew simultaneously. |
author2 |
LUIS FERNANDO REVERS, CNPUV; D. COSTENARO DA SILVA, CNPUV (bolsista); V. S. LAMPE, CNPUV (bolsista); PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; LUCAS DA RESSURREICAO GARRIDO, CNPUV; L. J. WELTER, UNIVERSIDADE FEDERAL DO PAMPA; P. B. IRALA, PROFIGEN DO BRASIL. |
author_facet |
LUIS FERNANDO REVERS, CNPUV; D. COSTENARO DA SILVA, CNPUV (bolsista); V. S. LAMPE, CNPUV (bolsista); PAULO RICARDO DIAS DE OLIVEIRA, CNPUV; LUCAS DA RESSURREICAO GARRIDO, CNPUV; L. J. WELTER, UNIVERSIDADE FEDERAL DO PAMPA; P. B. IRALA, PROFIGEN DO BRASIL. REVERS, L. F. SILVA, D. C. da LAMPE, V. S. OLIVEIRA, P. R. D. de GARRIDO, L. da R. WELTER, L. J. IRALA, P. B. |
format |
Separatas |
topic_facet |
Sequenciamento genético Apirenia Mapeamento genético Viticultura Uva Doença de planta Fungo Míldio Biologia molecular Variedade resistente |
author |
REVERS, L. F. SILVA, D. C. da LAMPE, V. S. OLIVEIRA, P. R. D. de GARRIDO, L. da R. WELTER, L. J. IRALA, P. B. |
author_sort |
REVERS, L. F. |
title |
Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
title_short |
Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
title_full |
Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
title_fullStr |
Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
title_full_unstemmed |
Co-localization of QTLs for seedlessness and downy mildew resistance in grapevine. |
title_sort |
co-localization of qtls for seedlessness and downy mildew resistance in grapevine. |
publishDate |
2010-10-28 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/865515 |
work_keys_str_mv |
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_version_ |
1756025831061192704 |