Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.

Information regarding the spatial distribution of palm trees in tropical forests is crucial for commercial exploitation and management. However, spatially continuous knowledge of palms occurrence is scarce and difficult to obtain with conventional approaches such as field inventories. Here, we developed a new method to map Amazonian palm species at the individual tree crown (ITC) level using RGB images acquired by a low-cost unmanned aerial vehicle (UAV). Our approach is based on morphological operations performed in the score maps of palm species derived from a fully convolutional neural network model. We first constructed a labeled dataset by dividing the study area (135 ha within an old-growth Amazon forest) into 28 plots of 250 m×150 m. Then, we manually outlined all palm trees seen in RGB images with 4 cm pixels. We identified three palm species: Attalea butyracea, Euterpe precatoria and Iriartea deltoidea. We randomly selected 22 plots (80%) for training and six plots (20%) for testing. We changed the plots for training and testing to evaluate the variabilityn, in the classification accuracy and assess model generalization. Our method outperformed the average producer?s accuracy of conventional patch-wise semantic segmentation (CSS) in 4.7%. Moreover, our method correctly identified, on average, 34.7 percentage points more ITCs than CSS, which tended to merge trees that are close to each other. The producer's accuracy of A. butyracea, E. precatoria and I. deltoidea was 78.6 ± 5.5%, 8.6 ± 1.4% and 96.6 ± 3.4%, respectively. Fortunately, one of the most exploited and commercialized palm species in the Amazon (E. precatoria, a.k.a, Açaí) was mapped with the highest classification accuracy. Maps of E. precatoria derived from low-cost UAV systems can support management projects and community-based forest monitoring programs in the Amazon.

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Main Authors: FERREIRA, M. P., ALMEIDA, D. R. A. de, PAPA, D. de A., MINERVINO, J. B. S., VERAS, H. F. P., FORMIGHIERI, A., SANTOS, C. A. N., FERREIRA, M. A. D., FIGUEIREDO, E. O., FERREIRA, E. J. L.
Other Authors: Matheus Pinheiro Ferreira, Instituto Militar de Engenharia (IME); Danilo Roberti Alves de Almeida, Universidade de São Paulo (USP); DANIEL DE ALMEIDA PAPA, CPAF-AC; Juliano Baldez Silva Minervino, Universidade Federal do Acre (Ufac); Hudson Franklin Pessoa Veras, Universidade Federal do Paraná (UFPR); Arthur Formighieri, Universidade Federal do Acre (Ufac); Caio Alexandre Nascimento Santos, Bolsista Embrapa Acre; Marcio Aurélio Dantas Ferreira, Fundação de Tecnologia do Estado do Acre (Funtac); EVANDRO ORFANO FIGUEIREDO, CPAF-AC; Evandro José Linhares Ferreira, Instituto Nacional de Pesquisas da Amazônia (Inpa).
Format: Artigo de periódico biblioteca
Language:Ingles
English
Published: 2020-07-31
Subjects:Palmeira, Palm trees, Mapeamento, Drone, Aerial surveys, Imagem RGB, DeepLabv3+, Bosques lluviosos, Madera tropical, Teledetección, Vehículos aéreos no tripulados, Fotografía aérea, Embrapa Acre, Rio Branco (AC), Acre, Amazônia Ocidental, Western Amazon, Amaz, Amazonia Occidental, Floresta Tropical, Espécie Nativa, Açaí, População de Planta, Biogeografia, Sensoriamento Remoto, Aerofotogrametria, Rain forests, Arecaceae, Euterpe precatoria, Tropical wood, Biogeography, Remote sensing, Unmanned aerial vehicles, Aerial photography,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124129
https://doi.org/10.1016/j.foreco.2020.118397
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spelling dig-alice-doc-11241292020-08-01T11:12:41Z Individual tree detection and species classification of Amazonian palms using UAV images and deep learning. FERREIRA, M. P. ALMEIDA, D. R. A. de PAPA, D. de A. MINERVINO, J. B. S. VERAS, H. F. P. FORMIGHIERI, A. SANTOS, C. A. N. FERREIRA, M. A. D. FIGUEIREDO, E. O. FERREIRA, E. J. L. Matheus Pinheiro Ferreira, Instituto Militar de Engenharia (IME); Danilo Roberti Alves de Almeida, Universidade de São Paulo (USP); DANIEL DE ALMEIDA PAPA, CPAF-AC; Juliano Baldez Silva Minervino, Universidade Federal do Acre (Ufac); Hudson Franklin Pessoa Veras, Universidade Federal do Paraná (UFPR); Arthur Formighieri, Universidade Federal do Acre (Ufac); Caio Alexandre Nascimento Santos, Bolsista Embrapa Acre; Marcio Aurélio Dantas Ferreira, Fundação de Tecnologia do Estado do Acre (Funtac); EVANDRO ORFANO FIGUEIREDO, CPAF-AC; Evandro José Linhares Ferreira, Instituto Nacional de Pesquisas da Amazônia (Inpa). Palmeira Palm trees Mapeamento Drone Aerial surveys Imagem RGB DeepLabv3+ Bosques lluviosos Madera tropical Teledetección Vehículos aéreos no tripulados Fotografía aérea Embrapa Acre Rio Branco (AC) Acre Amazônia Ocidental Western Amazon Amaz Amazonia Occidental Floresta Tropical Espécie Nativa Açaí População de Planta Biogeografia Sensoriamento Remoto Aerofotogrametria Rain forests Arecaceae Euterpe precatoria Tropical wood Biogeography Remote sensing Unmanned aerial vehicles Aerial photography Information regarding the spatial distribution of palm trees in tropical forests is crucial for commercial exploitation and management. However, spatially continuous knowledge of palms occurrence is scarce and difficult to obtain with conventional approaches such as field inventories. Here, we developed a new method to map Amazonian palm species at the individual tree crown (ITC) level using RGB images acquired by a low-cost unmanned aerial vehicle (UAV). Our approach is based on morphological operations performed in the score maps of palm species derived from a fully convolutional neural network model. We first constructed a labeled dataset by dividing the study area (135 ha within an old-growth Amazon forest) into 28 plots of 250 m×150 m. Then, we manually outlined all palm trees seen in RGB images with 4 cm pixels. We identified three palm species: Attalea butyracea, Euterpe precatoria and Iriartea deltoidea. We randomly selected 22 plots (80%) for training and six plots (20%) for testing. We changed the plots for training and testing to evaluate the variabilityn, in the classification accuracy and assess model generalization. Our method outperformed the average producer?s accuracy of conventional patch-wise semantic segmentation (CSS) in 4.7%. Moreover, our method correctly identified, on average, 34.7 percentage points more ITCs than CSS, which tended to merge trees that are close to each other. The producer's accuracy of A. butyracea, E. precatoria and I. deltoidea was 78.6 ± 5.5%, 8.6 ± 1.4% and 96.6 ± 3.4%, respectively. Fortunately, one of the most exploited and commercialized palm species in the Amazon (E. precatoria, a.k.a, Açaí) was mapped with the highest classification accuracy. Maps of E. precatoria derived from low-cost UAV systems can support management projects and community-based forest monitoring programs in the Amazon. 2020-08-01T11:12:33Z 2020-08-01T11:12:33Z 2020-07-31 2020 Artigo de periódico Forest Ecology and Management, v. 475, n. 118397, p. 1-11, 2020. 0378-1127 http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124129 https://doi.org/10.1016/j.foreco.2020.118397 Ingles en openAccess
institution EMBRAPA
collection DSpace
country Brasil
countrycode BR
component Bibliográfico
access En linea
databasecode dig-alice
tag biblioteca
region America del Sur
libraryname Sistema de bibliotecas de EMBRAPA
language Ingles
English
topic Palmeira
Palm trees
Mapeamento
Drone
Aerial surveys
Imagem RGB
DeepLabv3+
Bosques lluviosos
Madera tropical
Teledetección
Vehículos aéreos no tripulados
Fotografía aérea
Embrapa Acre
Rio Branco (AC)
Acre
Amazônia Ocidental
Western Amazon
Amaz
Amazonia Occidental
Floresta Tropical
Espécie Nativa
Açaí
População de Planta
Biogeografia
Sensoriamento Remoto
Aerofotogrametria
Rain forests
Arecaceae
Euterpe precatoria
Tropical wood
Biogeography
Remote sensing
Unmanned aerial vehicles
Aerial photography
Palmeira
Palm trees
Mapeamento
Drone
Aerial surveys
Imagem RGB
DeepLabv3+
Bosques lluviosos
Madera tropical
Teledetección
Vehículos aéreos no tripulados
Fotografía aérea
Embrapa Acre
Rio Branco (AC)
Acre
Amazônia Ocidental
Western Amazon
Amaz
Amazonia Occidental
Floresta Tropical
Espécie Nativa
Açaí
População de Planta
Biogeografia
Sensoriamento Remoto
Aerofotogrametria
Rain forests
Arecaceae
Euterpe precatoria
Tropical wood
Biogeography
Remote sensing
Unmanned aerial vehicles
Aerial photography
spellingShingle Palmeira
Palm trees
Mapeamento
Drone
Aerial surveys
Imagem RGB
DeepLabv3+
Bosques lluviosos
Madera tropical
Teledetección
Vehículos aéreos no tripulados
Fotografía aérea
Embrapa Acre
Rio Branco (AC)
Acre
Amazônia Ocidental
Western Amazon
Amaz
Amazonia Occidental
Floresta Tropical
Espécie Nativa
Açaí
População de Planta
Biogeografia
Sensoriamento Remoto
Aerofotogrametria
Rain forests
Arecaceae
Euterpe precatoria
Tropical wood
Biogeography
Remote sensing
Unmanned aerial vehicles
Aerial photography
Palmeira
Palm trees
Mapeamento
Drone
Aerial surveys
Imagem RGB
DeepLabv3+
Bosques lluviosos
Madera tropical
Teledetección
Vehículos aéreos no tripulados
Fotografía aérea
Embrapa Acre
Rio Branco (AC)
Acre
Amazônia Ocidental
Western Amazon
Amaz
Amazonia Occidental
Floresta Tropical
Espécie Nativa
Açaí
População de Planta
Biogeografia
Sensoriamento Remoto
Aerofotogrametria
Rain forests
Arecaceae
Euterpe precatoria
Tropical wood
Biogeography
Remote sensing
Unmanned aerial vehicles
Aerial photography
FERREIRA, M. P.
ALMEIDA, D. R. A. de
PAPA, D. de A.
MINERVINO, J. B. S.
VERAS, H. F. P.
FORMIGHIERI, A.
SANTOS, C. A. N.
FERREIRA, M. A. D.
FIGUEIREDO, E. O.
FERREIRA, E. J. L.
Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
description Information regarding the spatial distribution of palm trees in tropical forests is crucial for commercial exploitation and management. However, spatially continuous knowledge of palms occurrence is scarce and difficult to obtain with conventional approaches such as field inventories. Here, we developed a new method to map Amazonian palm species at the individual tree crown (ITC) level using RGB images acquired by a low-cost unmanned aerial vehicle (UAV). Our approach is based on morphological operations performed in the score maps of palm species derived from a fully convolutional neural network model. We first constructed a labeled dataset by dividing the study area (135 ha within an old-growth Amazon forest) into 28 plots of 250 m×150 m. Then, we manually outlined all palm trees seen in RGB images with 4 cm pixels. We identified three palm species: Attalea butyracea, Euterpe precatoria and Iriartea deltoidea. We randomly selected 22 plots (80%) for training and six plots (20%) for testing. We changed the plots for training and testing to evaluate the variabilityn, in the classification accuracy and assess model generalization. Our method outperformed the average producer?s accuracy of conventional patch-wise semantic segmentation (CSS) in 4.7%. Moreover, our method correctly identified, on average, 34.7 percentage points more ITCs than CSS, which tended to merge trees that are close to each other. The producer's accuracy of A. butyracea, E. precatoria and I. deltoidea was 78.6 ± 5.5%, 8.6 ± 1.4% and 96.6 ± 3.4%, respectively. Fortunately, one of the most exploited and commercialized palm species in the Amazon (E. precatoria, a.k.a, Açaí) was mapped with the highest classification accuracy. Maps of E. precatoria derived from low-cost UAV systems can support management projects and community-based forest monitoring programs in the Amazon.
author2 Matheus Pinheiro Ferreira, Instituto Militar de Engenharia (IME); Danilo Roberti Alves de Almeida, Universidade de São Paulo (USP); DANIEL DE ALMEIDA PAPA, CPAF-AC; Juliano Baldez Silva Minervino, Universidade Federal do Acre (Ufac); Hudson Franklin Pessoa Veras, Universidade Federal do Paraná (UFPR); Arthur Formighieri, Universidade Federal do Acre (Ufac); Caio Alexandre Nascimento Santos, Bolsista Embrapa Acre; Marcio Aurélio Dantas Ferreira, Fundação de Tecnologia do Estado do Acre (Funtac); EVANDRO ORFANO FIGUEIREDO, CPAF-AC; Evandro José Linhares Ferreira, Instituto Nacional de Pesquisas da Amazônia (Inpa).
author_facet Matheus Pinheiro Ferreira, Instituto Militar de Engenharia (IME); Danilo Roberti Alves de Almeida, Universidade de São Paulo (USP); DANIEL DE ALMEIDA PAPA, CPAF-AC; Juliano Baldez Silva Minervino, Universidade Federal do Acre (Ufac); Hudson Franklin Pessoa Veras, Universidade Federal do Paraná (UFPR); Arthur Formighieri, Universidade Federal do Acre (Ufac); Caio Alexandre Nascimento Santos, Bolsista Embrapa Acre; Marcio Aurélio Dantas Ferreira, Fundação de Tecnologia do Estado do Acre (Funtac); EVANDRO ORFANO FIGUEIREDO, CPAF-AC; Evandro José Linhares Ferreira, Instituto Nacional de Pesquisas da Amazônia (Inpa).
FERREIRA, M. P.
ALMEIDA, D. R. A. de
PAPA, D. de A.
MINERVINO, J. B. S.
VERAS, H. F. P.
FORMIGHIERI, A.
SANTOS, C. A. N.
FERREIRA, M. A. D.
FIGUEIREDO, E. O.
FERREIRA, E. J. L.
format Artigo de periódico
topic_facet Palmeira
Palm trees
Mapeamento
Drone
Aerial surveys
Imagem RGB
DeepLabv3+
Bosques lluviosos
Madera tropical
Teledetección
Vehículos aéreos no tripulados
Fotografía aérea
Embrapa Acre
Rio Branco (AC)
Acre
Amazônia Ocidental
Western Amazon
Amaz
Amazonia Occidental
Floresta Tropical
Espécie Nativa
Açaí
População de Planta
Biogeografia
Sensoriamento Remoto
Aerofotogrametria
Rain forests
Arecaceae
Euterpe precatoria
Tropical wood
Biogeography
Remote sensing
Unmanned aerial vehicles
Aerial photography
author FERREIRA, M. P.
ALMEIDA, D. R. A. de
PAPA, D. de A.
MINERVINO, J. B. S.
VERAS, H. F. P.
FORMIGHIERI, A.
SANTOS, C. A. N.
FERREIRA, M. A. D.
FIGUEIREDO, E. O.
FERREIRA, E. J. L.
author_sort FERREIRA, M. P.
title Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
title_short Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
title_full Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
title_fullStr Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
title_full_unstemmed Individual tree detection and species classification of Amazonian palms using UAV images and deep learning.
title_sort individual tree detection and species classification of amazonian palms using uav images and deep learning.
publishDate 2020-07-31
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1124129
https://doi.org/10.1016/j.foreco.2020.118397
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