Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing.
Tambaqui (Colossoma macropomum) is the most important native freshwater fish farmed in Brazil. Production and supply chains are consistently growing, while current yearly production levels of this species exceed 200.000mt. Recent efforts of our research team have produced a draft genome sequence for this species. Here we describe results from SNP discovery efforts using deep sequencing of reduced representation libraries (RRLs) of varying fragment sizes. Ten micrograms of bulked DNA samples from 63 unrelated fish (males and females) were completely digested with HaeIII.
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Format: | Anais e Proceedings de eventos biblioteca |
Language: | pt_BR pt_BR |
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2020-01-15
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Subjects: | Colossoma Macropomum, Tambaqui, Peixe, Single nucleotide polymorphism, Bioinformatics, Fish, |
Online Access: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/1118808 |
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dig-alice-doc-11188082020-01-15T18:13:19Z Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. IANELLA, P. YAMAGISHI, M. E. B. VARELA, E. S. VILLELA, L. C. V. PAIVA, S. R. CAETANO, A. R. PATRICIA IANELLA, Cenargen; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; SAMUEL REZENDE PAIVA, Cenargen; ALEXANDRE RODRIGUES CAETANO, Cenargen. Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish Tambaqui (Colossoma macropomum) is the most important native freshwater fish farmed in Brazil. Production and supply chains are consistently growing, while current yearly production levels of this species exceed 200.000mt. Recent efforts of our research team have produced a draft genome sequence for this species. Here we describe results from SNP discovery efforts using deep sequencing of reduced representation libraries (RRLs) of varying fragment sizes. Ten micrograms of bulked DNA samples from 63 unrelated fish (males and females) were completely digested with HaeIII. 2020-01-15T18:13:14Z 2020-01-15T18:13:14Z 2020-01-15 2019 2020-01-15T18:13:14Z Anais e Proceedings de eventos In: AQUACULTURE, 2019, New Orleans. Abstracts. [S.l.]: Word Aquaculture society, 2019. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1118808 pt_BR pt_BR openAccess |
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Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish |
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Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish IANELLA, P. YAMAGISHI, M. E. B. VARELA, E. S. VILLELA, L. C. V. PAIVA, S. R. CAETANO, A. R. Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
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Tambaqui (Colossoma macropomum) is the most important native freshwater fish farmed in Brazil. Production and supply chains are consistently growing, while current yearly production levels of this species exceed 200.000mt. Recent efforts of our research team have produced a draft genome sequence for this species. Here we describe results from SNP discovery efforts using deep sequencing of reduced representation libraries (RRLs) of varying fragment sizes. Ten micrograms of bulked DNA samples from 63 unrelated fish (males and females) were completely digested with HaeIII. |
author2 |
PATRICIA IANELLA, Cenargen; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; SAMUEL REZENDE PAIVA, Cenargen; ALEXANDRE RODRIGUES CAETANO, Cenargen. |
author_facet |
PATRICIA IANELLA, Cenargen; MICHEL EDUARDO BELEZA YAMAGISHI, CNPTIA; EDUARDO SOUSA VARELA, CNPASA; LUCIANA CRISTINE VASQUES VILLELA, CNPASA; SAMUEL REZENDE PAIVA, Cenargen; ALEXANDRE RODRIGUES CAETANO, Cenargen. IANELLA, P. YAMAGISHI, M. E. B. VARELA, E. S. VILLELA, L. C. V. PAIVA, S. R. CAETANO, A. R. |
format |
Anais e Proceedings de eventos |
topic_facet |
Colossoma Macropomum Tambaqui Peixe Single nucleotide polymorphism Bioinformatics Fish |
author |
IANELLA, P. YAMAGISHI, M. E. B. VARELA, E. S. VILLELA, L. C. V. PAIVA, S. R. CAETANO, A. R. |
author_sort |
IANELLA, P. |
title |
Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
title_short |
Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
title_full |
Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
title_fullStr |
Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
title_full_unstemmed |
Tambaqui (Colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
title_sort |
tambaqui (colossoma macropomum) single nucleotide polymorphism discovery by reduced representation library deep sequencing. |
publishDate |
2020-01-15 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/1118808 |
work_keys_str_mv |
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