Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.

Drylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems.

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Main Authors: LACERDA JÚNIOR, G. V., NORONHA, M. F., CABRAL, L., DELFORNO, T. P., SOUSA, S. T. P. de, FERNANDES JUNIOR, P. I., MELO, I. S., OLIVEIRA. V. M.
Other Authors: GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA.
Format: Artigo de periódico biblioteca
Language:English
eng
Published: 2019-04-15
Subjects:Floresta seca, Bioma Caatinga, Floresta seca tropical, Comunidades microbianas do solo, Metagenômica, Sazonalidade, Floresta Nativa, Floresta, Caatinga, Solo, Uso da Terra, Floresta Tropical, Ecossistema, Dry forests,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220
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spelling dig-alice-doc-11082202019-04-16T00:40:18Z Land use and seasonal effects on the soil microbiome of a Brazilian dry forest. LACERDA JÚNIOR, G. V. NORONHA, M. F. CABRAL, L. DELFORNO, T. P. SOUSA, S. T. P. de FERNANDES JUNIOR, P. I. MELO, I. S. OLIVEIRA. V. M. GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA. Floresta seca Bioma Caatinga Floresta seca tropical Comunidades microbianas do solo Metagenômica Sazonalidade Floresta Nativa Floresta Caatinga Solo Uso da Terra Floresta Tropical Ecossistema Dry forests Drylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems. Article 648. 2019-04-16T00:40:11Z 2019-04-16T00:40:11Z 2019-04-15 2019 2019-12-02T11:11:11Z Artigo de periódico Frontiers in Microbiology, v. 10, abr. 2019. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220 10.3389/fmicb.2019.00648 en eng openAccess
institution EMBRAPA
collection DSpace
country Brasil
countrycode BR
component Bibliográfico
access En linea
databasecode dig-alice
tag biblioteca
region America del Sur
libraryname Sistema de bibliotecas de EMBRAPA
language English
eng
topic Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
spellingShingle Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
LACERDA JÚNIOR, G. V.
NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
description Drylands occupy approximately 41% of the Earth?s terrestrial surface. Climate change and land use practices are expected to affect biogeochemical cycling by the soil microbiome in these ecosystems. Understanding how soil microbial community might respond to these drivers is extremely important to mitigate the processes of land degradation and desertification. The Caatinga, an exclusively Brazilian biome composed of an extensive seasonal tropical dry forest, is exposed to variable spatiotemporal rainfall patterns as well as strong human-driven pressures. Herein, an integrated analysis of shotgun metagenomics approach coupled to meteorological data was employed to unravel the impact of seasonality and land use change on soil microbiome from preserved and agriculture-affected experimental fields in Caatinga drylands. Multivariate analysis suggested that microbial communities of preserved soils under seasonal changes were shaped primarily by water deficit, with a strong increase of Actinobacteria and Proteobacteria members in the dry and rainy seasons, respectively. In contrast, nutrient availability notably played a critical role in driving the microbial community in agriculture-affected soils. The strong enrichment of bacterial genera belonging to the poorly-known phylum Acidobacteria (?Candidatus Solibacter? and ?Candidatus Koribacter?) in soils from dry season affected by ferti-irrigation practices presupposes a contrasting copiotrophic lifestyle and ecological role in mitigating the impact of chemical fertilization. Functional analyses identify overrepresented genes related to osmotic stress response (synthesis of osmoprotectant compounds, accumulation of potassium ions) and preferential carbon and nitrogen utilization when comparing the microbiome of preserved soils under seasonal changes, reflecting differences in the genetic potential for nutrient cycling and C acquisition in the environment. However, the prevalence of nitrosative stress and denitrification functions in irrigation/fertilization-affected soils of the dry season clearly suggest that nutrient input and disruption of natural water regime may impact biogeochemical cycles linked to the microbial processes, with potential impacts on the ecosystem functionality. These findings help to better understand how natural seasonality and agricultural management differentially affect soil microbial ecology from dry forests, providing support for the development of more sustainable land management in dryland ecosystems.
author2 GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA.
author_facet GILENO V. LACERDA JÚNIOR; MELLINE F. NORONHA; LUCÉLIA CABRAL; TIAGO P. DELFORNO; SANDERSON TARCISO PEREIRA DE SOUSA; PAULO IVAN FERNANDES JUNIOR, CPATSA; ITAMAR S. MELO; VALÉRIA M. OLIVEIRA.
LACERDA JÚNIOR, G. V.
NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
format Artigo de periódico
topic_facet Floresta seca
Bioma Caatinga
Floresta seca tropical
Comunidades microbianas do solo
Metagenômica
Sazonalidade
Floresta Nativa
Floresta
Caatinga
Solo
Uso da Terra
Floresta Tropical
Ecossistema
Dry forests
author LACERDA JÚNIOR, G. V.
NORONHA, M. F.
CABRAL, L.
DELFORNO, T. P.
SOUSA, S. T. P. de
FERNANDES JUNIOR, P. I.
MELO, I. S.
OLIVEIRA. V. M.
author_sort LACERDA JÚNIOR, G. V.
title Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_short Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_full Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_fullStr Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_full_unstemmed Land use and seasonal effects on the soil microbiome of a Brazilian dry forest.
title_sort land use and seasonal effects on the soil microbiome of a brazilian dry forest.
publishDate 2019-04-15
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1108220
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