Molecular analysis of genetic diversity among vine accessions using DNA markers.

Viticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant.

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Main Authors: COSTA, A. F. da, TEODORO, P. E., BHERING, L. L., TARDIN, F. D., DAHER, R. F., CAMPOS, W. F., VIANA, A. P., PEREIRA, M. G.
Other Authors: Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro.
Format: Artigo de periódico biblioteca
Language:English
eng
Published: 2017-12-14
Subjects:Análise molecular, Videira., Marcador molecular, Variação genética.,
Online Access:http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614
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spelling dig-alice-doc-10826142017-12-14T23:23:51Z Molecular analysis of genetic diversity among vine accessions using DNA markers. COSTA, A. F. da TEODORO, P. E. BHERING, L. L. TARDIN, F. D. DAHER, R. F. CAMPOS, W. F. VIANA, A. P. PEREIRA, M. G. Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro. Análise molecular Videira. Marcador molecular Variação genética. Viticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant. 2017-12-14T23:23:44Z 2017-12-14T23:23:44Z 2017-12-14 2017 2017-12-14T23:23:44Z Artigo de periódico Genetics and Molecular Research, Ribeirão Preto, v. 16, n. 2, p. 1-9, 2017. http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614 10.4238/gmr16029586 en eng openAccess
institution EMBRAPA
collection DSpace
country Brasil
countrycode BR
component Bibliográfico
access En linea
databasecode dig-alice
tag biblioteca
region America del Sur
libraryname Sistema de bibliotecas de EMBRAPA
language English
eng
topic Análise molecular
Videira.
Marcador molecular
Variação genética.
Análise molecular
Videira.
Marcador molecular
Variação genética.
spellingShingle Análise molecular
Videira.
Marcador molecular
Variação genética.
Análise molecular
Videira.
Marcador molecular
Variação genética.
COSTA, A. F. da
TEODORO, P. E.
BHERING, L. L.
TARDIN, F. D.
DAHER, R. F.
CAMPOS, W. F.
VIANA, A. P.
PEREIRA, M. G.
Molecular analysis of genetic diversity among vine accessions using DNA markers.
description Viticulture presents a number of economic and social advantages, such as increasing employment levels and fixing the labor force in rural areas. With the aim of initiating a program of genetic improvement in grapevine from the State University of the state of Rio de Janeiro North Darcy Ribeiro, genetic diversity between 40 genotypes (varieties, rootstock, and species of different subgenera) was evaluated using Random amplified polymorphic DNA (RAPD) molecular markers. We built a matrix of binary data, whereby the presence of a band was assigned as "1" and the absence of a band was assigned as "0". The genetic distance was calculated between pairs of genotypes based on the arithmetic complement from the Jaccard Index. The results revealed the presence of considerable variability in the collection. Analysis of the genetic dissimilarity matrix revealed that the most dissimilar genotypes were Rupestris du Lot and Vitis rotundifolia because they were the most genetically distant (0.5972). The most similar were genotypes 31 (unidentified) and Rupestris du lot, which showed zero distance, confirming the results of field observations. A duplicate was confirmed, consistent with field observations, and a short distance was found between the variety "Italy" and its mutation, "Ruby". The grouping methods used were somewhat concordant.
author2 Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro.
author_facet Instituto Capixaba de Pesquisa, Assistência Técnica e Extensão Rural; Universidade Federal de Viçosa; Universidade Federal de Viçosa; FLAVIO DESSAUNE TARDIN, CNPMS; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro; Universidade Estadual do Norte Fluminense Darcy Ribeiro.
COSTA, A. F. da
TEODORO, P. E.
BHERING, L. L.
TARDIN, F. D.
DAHER, R. F.
CAMPOS, W. F.
VIANA, A. P.
PEREIRA, M. G.
format Artigo de periódico
topic_facet Análise molecular
Videira.
Marcador molecular
Variação genética.
author COSTA, A. F. da
TEODORO, P. E.
BHERING, L. L.
TARDIN, F. D.
DAHER, R. F.
CAMPOS, W. F.
VIANA, A. P.
PEREIRA, M. G.
author_sort COSTA, A. F. da
title Molecular analysis of genetic diversity among vine accessions using DNA markers.
title_short Molecular analysis of genetic diversity among vine accessions using DNA markers.
title_full Molecular analysis of genetic diversity among vine accessions using DNA markers.
title_fullStr Molecular analysis of genetic diversity among vine accessions using DNA markers.
title_full_unstemmed Molecular analysis of genetic diversity among vine accessions using DNA markers.
title_sort molecular analysis of genetic diversity among vine accessions using dna markers.
publishDate 2017-12-14
url http://www.alice.cnptia.embrapa.br/alice/handle/doc/1082614
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