Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling
Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial community profiling in a mock community, hybrid catfish samples (digesta, gill swab, skin swab) and water samples (pond water and holding tank).
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| Format: | Dataset biblioteca |
| Published: |
2022
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| Subjects: | Genetics, raw sequence reads, |
| Online Access: | https://figshare.com/articles/dataset/Comparison_of_next-generation_sequencing_methods_for_catfish_bacterial_microbiota_profiling/25089893 |
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dat-usda-us-article250898932022-04-29T00:00:00Z Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling USDA ARS (18794668) Genetics raw sequence reads Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial community profiling in a mock community, hybrid catfish samples (digesta, gill swab, skin swab) and water samples (pond water and holding tank). 2022-04-29T00:00:00Z Dataset Dataset 10113/AF25089893 https://figshare.com/articles/dataset/Comparison_of_next-generation_sequencing_methods_for_catfish_bacterial_microbiota_profiling/25089893 Copyright Undetermined |
| institution |
USDA US |
| collection |
Figshare |
| country |
Estados Unidos |
| countrycode |
US |
| component |
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| access |
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| databasecode |
dat-usda-us |
| tag |
biblioteca |
| region |
America del Norte |
| libraryname |
National Agricultural Library of USDA |
| topic |
Genetics raw sequence reads |
| spellingShingle |
Genetics raw sequence reads USDA ARS (18794668) Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| description |
Compared 3 different 16S rRNA sequencing protocols (two nanopore sequencing protocols targeting full length 16S rRNA gene and Illumina MiSeq on V4 region) for bacterial community profiling in a mock community, hybrid catfish samples (digesta, gill swab, skin swab) and water samples (pond water and holding tank). |
| format |
Dataset |
| author |
USDA ARS (18794668) |
| author_facet |
USDA ARS (18794668) |
| author_sort |
USDA ARS (18794668) |
| title |
Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| title_short |
Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| title_full |
Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| title_fullStr |
Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| title_full_unstemmed |
Comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| title_sort |
comparison of next-generation sequencing methods for catfish bacterial microbiota profiling |
| publishDate |
2022 |
| url |
https://figshare.com/articles/dataset/Comparison_of_next-generation_sequencing_methods_for_catfish_bacterial_microbiota_profiling/25089893 |
| work_keys_str_mv |
AT usdaars18794668 comparisonofnextgenerationsequencingmethodsforcatfishbacterialmicrobiotaprofiling |
| _version_ |
1813294044584869888 |