Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris
<p><em>Ramularia crupinae</em> is a foliar and stem blighting fungal pathogen specific to the invasive rangeland weed common crupina (<em>Crupina vulgaris</em>). This fungal plant pathogen was recently approved by the Animal and Plant Health Inspection Service (APHIS) as the first biological control agent for the management of common crupina in the western United States. The genome assembly for <em>R. crupinae</em> 00-010 (<a href="https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html">https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html</a>) contains 18 contigs totaling 37.9 Mb, and was annotated using the JGI fungal annotation pipeline. The information contained within this Ag Data Commons dataset provides an updated <em>R. crupinae</em> chromosome-level genome assembly. These data are freely available for research purposes. </p> <p>Resources in this dataset:</p> <ul> <li>Resource Title: Ramularia crupinae chromosome-level assembly File Name: Ramularia crupinae_14chrm.zip Resource Description: The R. crupinae genome was re-assembled to improve the contiguity of putative chromosome length scaffolds and attempt chromosome-level assembly. This improved assembly was 37,889,040 bp in size with 15 fragments (N50: 2,786,127 bp) and 810x coverage.</li> </ul>
Saved in:
| Main Authors: | , |
|---|---|
| Format: | Dataset biblioteca |
| Published: |
2023
|
| Subjects: | Genomics and transcriptomics, Genetics, Environmental sciences, Biosecurity science and invasive species ecology, Environmental management, Ramularia, fungal genome, Ramularia crupinae, genome assembly, NP304, data.gov, ARS, |
| Online Access: | https://figshare.com/articles/dataset/Data_from_Genomic_features_of_the_host-specific_fungal_biocontrol_agent_Ramularia_crupinae_approved_for_the_management_of_the_federally_noxious_weed_Crupina_vulgaris/24857598 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| id |
dat-usda-us-article24857598 |
|---|---|
| record_format |
figshare |
| spelling |
dat-usda-us-article248575982023-10-06T00:00:00Z Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris Matthew A. Tancos (17667615) Michael R. Fulcher (17485359) Genomics and transcriptomics Genetics Environmental sciences Biosecurity science and invasive species ecology Environmental management Ramularia fungal genome Ramularia crupinae genome assembly NP304 data.gov ARS <p><em>Ramularia crupinae</em> is a foliar and stem blighting fungal pathogen specific to the invasive rangeland weed common crupina (<em>Crupina vulgaris</em>). This fungal plant pathogen was recently approved by the Animal and Plant Health Inspection Service (APHIS) as the first biological control agent for the management of common crupina in the western United States. The genome assembly for <em>R. crupinae</em> 00-010 (<a href="https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html">https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html</a>) contains 18 contigs totaling 37.9 Mb, and was annotated using the JGI fungal annotation pipeline. The information contained within this Ag Data Commons dataset provides an updated <em>R. crupinae</em> chromosome-level genome assembly. These data are freely available for research purposes. </p> <p>Resources in this dataset:</p> <ul> <li>Resource Title: Ramularia crupinae chromosome-level assembly File Name: Ramularia crupinae_14chrm.zip Resource Description: The R. crupinae genome was re-assembled to improve the contiguity of putative chromosome length scaffolds and attempt chromosome-level assembly. This improved assembly was 37,889,040 bp in size with 15 fragments (N50: 2,786,127 bp) and 810x coverage.</li> </ul> 2023-10-06T00:00:00Z Dataset Dataset 10.15482/usda.adc/1529785 https://figshare.com/articles/dataset/Data_from_Genomic_features_of_the_host-specific_fungal_biocontrol_agent_Ramularia_crupinae_approved_for_the_management_of_the_federally_noxious_weed_Crupina_vulgaris/24857598 U.S. Public Domain |
| institution |
USDA US |
| collection |
Figshare |
| country |
Estados Unidos |
| countrycode |
US |
| component |
Datos de investigación |
| access |
En linea |
| databasecode |
dat-usda-us |
| tag |
biblioteca |
| region |
America del Norte |
| libraryname |
National Agricultural Library of USDA |
| topic |
Genomics and transcriptomics Genetics Environmental sciences Biosecurity science and invasive species ecology Environmental management Ramularia fungal genome Ramularia crupinae genome assembly NP304 data.gov ARS |
| spellingShingle |
Genomics and transcriptomics Genetics Environmental sciences Biosecurity science and invasive species ecology Environmental management Ramularia fungal genome Ramularia crupinae genome assembly NP304 data.gov ARS Matthew A. Tancos (17667615) Michael R. Fulcher (17485359) Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| description |
<p><em>Ramularia crupinae</em> is a foliar and stem blighting fungal pathogen specific to the invasive rangeland weed common crupina (<em>Crupina vulgaris</em>). This fungal plant pathogen was recently approved by the Animal and Plant Health Inspection Service (APHIS) as the first biological control agent for the management of common crupina in the western United States. The genome assembly for <em>R. crupinae</em> 00-010 (<a href="https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html">https://mycocosm.jgi.doe.gov/Ramcr1/Ramcr1.info.html</a>) contains 18 contigs totaling 37.9 Mb, and was annotated using the JGI fungal annotation pipeline. The information contained within this Ag Data Commons dataset provides an updated <em>R. crupinae</em> chromosome-level genome assembly. These data are freely available for research purposes. </p>
<p>Resources in this dataset:</p>
<ul>
<li>Resource Title: Ramularia crupinae chromosome-level assembly
File Name: Ramularia crupinae_14chrm.zip
Resource Description: The R. crupinae genome was re-assembled to improve the contiguity of putative chromosome length scaffolds and attempt chromosome-level assembly. This improved assembly was 37,889,040 bp in size with 15 fragments (N50: 2,786,127 bp) and 810x coverage.</li>
</ul> |
| format |
Dataset |
| author |
Matthew A. Tancos (17667615) Michael R. Fulcher (17485359) |
| author_facet |
Matthew A. Tancos (17667615) Michael R. Fulcher (17485359) |
| author_sort |
Matthew A. Tancos (17667615) |
| title |
Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| title_short |
Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| title_full |
Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| title_fullStr |
Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| title_full_unstemmed |
Data from: Genomic features of the host-specific fungal biocontrol agent Ramularia crupinae approved for the management of the federally noxious weed Crupina vulgaris |
| title_sort |
data from: genomic features of the host-specific fungal biocontrol agent ramularia crupinae approved for the management of the federally noxious weed crupina vulgaris |
| publishDate |
2023 |
| url |
https://figshare.com/articles/dataset/Data_from_Genomic_features_of_the_host-specific_fungal_biocontrol_agent_Ramularia_crupinae_approved_for_the_management_of_the_federally_noxious_weed_Crupina_vulgaris/24857598 |
| work_keys_str_mv |
AT matthewatancos17667615 datafromgenomicfeaturesofthehostspecificfungalbiocontrolagentramulariacrupinaeapprovedforthemanagementofthefederallynoxiousweedcrupinavulgaris AT michaelrfulcher17485359 datafromgenomicfeaturesofthehostspecificfungalbiocontrolagentramulariacrupinaeapprovedforthemanagementofthefederallynoxiousweedcrupinavulgaris |
| _version_ |
1802722141575053312 |