Angus Sequence Data: Animal 20735
<p>Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p> <p>The National Animal Germplasm Program has germplasm for this animal, with the repository number 20735. </p> <p>There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Animal 20735 Sequence Data - SCINet.</p> <p>File Name: Web Page, url: <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/</a> </p><p>tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R2_001.fastq.gz</p> <p>The .tar file can be accessed/retrieved with valid SCINet account at this location: /KEEP/ADCdatastorage/NAL/published/node32108/</p> <p>See the SCINet File Transfer guide for more information on moving large files: <a href="https://scinet.usda.gov/guides/data/datatransfer">https://scinet.usda.gov/guides/data/datatransfer</a></p> <p>Globus users: The files can also be accessed through Globus by following <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">this data link</a>.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.</p></li></ul><p></p>
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Format: | Dataset biblioteca |
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2021
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Subjects: | Animal production, Genomics and transcriptomics, Genetics, Genetics not elsewhere classified, GRIN, animals, cryopreservation, germplasm, genetic diversity, DNA sequence, NP101, data.gov, ARS, |
Online Access: | https://figshare.com/articles/dataset/Angus_Sequence_Data_Animal_20735/24665928 |
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dat-usda-us-article246659282021-01-27T00:00:00Z Angus Sequence Data: Animal 20735 Harvey Blackburn (17482158) Animal production Genomics and transcriptomics Genetics Genetics not elsewhere classified GRIN animals cryopreservation germplasm genetic diversity DNA sequence NP101 data.gov ARS <p>Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p> <p>The National Animal Germplasm Program has germplasm for this animal, with the repository number 20735. </p> <p>There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Animal 20735 Sequence Data - SCINet.</p> <p>File Name: Web Page, url: <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/</a> </p><p>tar file containing 14 files. The files are: RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R1_001.fastq.gz RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R2_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R1_001.fastq.gz RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R2_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R1_001.fastq.gz RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R2_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R1_001.fastq.gz RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R2_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R1_001.fastq.gz RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R2_001.fastq.gz</p> <p>The .tar file can be accessed/retrieved with valid SCINet account at this location: /KEEP/ADCdatastorage/NAL/published/node32108/</p> <p>See the SCINet File Transfer guide for more information on moving large files: <a href="https://scinet.usda.gov/guides/data/datatransfer">https://scinet.usda.gov/guides/data/datatransfer</a></p> <p>Globus users: The files can also be accessed through Globus by following <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">this data link</a>.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.</p></li></ul><p></p> 2021-01-27T00:00:00Z Dataset Dataset 10.15482/usda.adc/1529266 https://figshare.com/articles/dataset/Angus_Sequence_Data_Animal_20735/24665928 U.S. Public Domain |
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Animal production Genomics and transcriptomics Genetics Genetics not elsewhere classified GRIN animals cryopreservation germplasm genetic diversity DNA sequence NP101 data.gov ARS |
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Animal production Genomics and transcriptomics Genetics Genetics not elsewhere classified GRIN animals cryopreservation germplasm genetic diversity DNA sequence NP101 data.gov ARS Harvey Blackburn (17482158) Angus Sequence Data: Animal 20735 |
description |
<p>Whole genome sequence data for Bovidae Bos taurus - beef Angus. The data is in "fastq" format.</p>
<p>The National Animal Germplasm Program has germplasm for this animal, with the repository number 20735. </p>
<p>There are two versions of each file because we did paired end sequencing. There are two reads for each of the 210 data lines (a forward and a reverse read) summing to 420 total. A diagram of this is provided in the <a href="https://data.nal.usda.gov/dataset/angus-sequence-dataset-collection">Collection Dataset</a>. In the diagram, the two reads would correspond to read 1 and read 3. </p><div><br>Resources in this dataset:</div><br><ul><li><p>Resource Title: Animal 20735 Sequence Data - SCINet.</p> <p>File Name: Web Page, url: <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/</a> </p><p>tar file containing 14 files. The files are:
RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R1_001.fastq.gz
RAPiD-Genomics_F112_CSU_136201_P001_WB01_i5-515_i7-109_S13_L003_R2_001.fastq.gz
RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R1_001.fastq.gz
RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S13_L001_R2_001.fastq.gz
RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R1_001.fastq.gz
RAPiD-Genomics-F113-CSU-136201-P001-WB01-i5-515-i7-109_S149_L002_R2_001.fastq.gz
RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R1_001.fastq.gz
RAPiD-Genomics-F114-CSU-136201-P001-WB01-i5-515-i7-109_S13_L003_R2_001.fastq.gz
RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R1_001.fastq.gz
RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L001_R2_001.fastq.gz
RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R1_001.fastq.gz
RAPiD-Genomics_F115_CSU_136201_P001_WB01_i5-515_i7-109_S13_L002_R2_001.fastq.gz
RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R1_001.fastq.gz
RAPiD-Genomics_F116_CSU_136201_P001_WB01_i5-515_i7-109_S368_L002_R2_001.fastq.gz</p>
<p>The .tar file can be accessed/retrieved with valid SCINet account at this location: /KEEP/ADCdatastorage/NAL/published/node32108/</p>
<p>See the SCINet File Transfer guide for more information on moving large files: <a href="https://scinet.usda.gov/guides/data/datatransfer">https://scinet.usda.gov/guides/data/datatransfer</a></p>
<p>Globus users:
The files can also be accessed through Globus by following <a href="https://app.globus.org/file-manager?destination_id=e5391440-1d5e-11ec-a0a0-6b21ca6daf73&destination_path=/node32108/">this data link</a>.The user will need to log in to Globus in order to retrieve this data. User accounts are free of charge with several options for signing on. Instructions for creating an account are on the login page.</p></li></ul><p></p> |
format |
Dataset |
author |
Harvey Blackburn (17482158) |
author_facet |
Harvey Blackburn (17482158) |
author_sort |
Harvey Blackburn (17482158) |
title |
Angus Sequence Data: Animal 20735 |
title_short |
Angus Sequence Data: Animal 20735 |
title_full |
Angus Sequence Data: Animal 20735 |
title_fullStr |
Angus Sequence Data: Animal 20735 |
title_full_unstemmed |
Angus Sequence Data: Animal 20735 |
title_sort |
angus sequence data: animal 20735 |
publishDate |
2021 |
url |
https://figshare.com/articles/dataset/Angus_Sequence_Data_Animal_20735/24665928 |
work_keys_str_mv |
AT harveyblackburn17482158 angussequencedataanimal20735 |
_version_ |
1807159062881632256 |