Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices

Genomic prediction models may be used in plant breeding pipelines. They are often calibrated using multi-generation data and there is an open question of whether all available data or a subset of it should be used to calibrate genomic prediction models. Therefore, a study was undertaken to determine whether combining sparse selection indexes (SSIs) and kernel methods could further improve prediction accuracy when training genomic models using multi-generation data. This dataset contains the genotypic and phenotypic data from CIMMYT maize doubled haploid lines that were used to perform the analyses. The results of the analyses are presented in the accompanying article.

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Bibliographic Details
Main Authors: Lopez-Cruz, Marco, Beyene, Yoseph, Gowda, Manje, Crossa, Jose, Pérez-Rodríguez, Paulino, de los Campos, Gustavo
Other Authors: Dreher, Kate
Format: Genotypic data biblioteca
Language:English
Published: CIMMYT Research Data & Software Repository Network 2021
Subjects:Agricultural Sciences, Maize, Agricultural research, Plant Breeding, Zea mays, Plant height, Anthesis time, Grain yield, genotypes, KBLUP, GBLUP, GSSI,
Online Access:https://hdl.handle.net/11529/10548608
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spelling dat-cimmyt-11529105486082021-08-09T01:00:18ZReplication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indiceshttps://hdl.handle.net/11529/10548608Lopez-Cruz, MarcoBeyene, YosephGowda, ManjeCrossa, JosePérez-Rodríguez, Paulinode los Campos, GustavoCIMMYT Research Data & Software Repository NetworkGenomic prediction models may be used in plant breeding pipelines. They are often calibrated using multi-generation data and there is an open question of whether all available data or a subset of it should be used to calibrate genomic prediction models. Therefore, a study was undertaken to determine whether combining sparse selection indexes (SSIs) and kernel methods could further improve prediction accuracy when training genomic models using multi-generation data. This dataset contains the genotypic and phenotypic data from CIMMYT maize doubled haploid lines that were used to perform the analyses. The results of the analyses are presented in the accompanying article.Agricultural SciencesMaizeAgricultural researchPlant BreedingZea maysPlant heightAnthesis timeGrain yieldgenotypesKBLUPGBLUPGSSIEnglish2021Dreher, KateBill and Melinda Gates Foundation (BMGF)Foreign, Commonwealth and Development Office (FCDO)Foundation for Research Levy on Agricultural Products (FFL)Agricultural Agreement Research Fund (JA)United States Agency for International Development (USAID)CGIAR Research Program on Maize (MAIZE)Accelerating Genetic Gains in Maize and Wheat for Improved Livelihoods (AGG)Global Maize Program (GMP)Genetic Resources Program (GRP)Biometrics and Statistics Unit (BSU)CGIARGenotypic dataPhenotypic dataExperimental data
institution CIMMYT
collection Dataverse
country México
countrycode MX
component Datos de investigación
access En linea
En linea
databasecode dat-cimmyt
tag biblioteca
region America del Norte
libraryname Centro Internacional de Mejoramiento de Maíz y Trigo
language English
topic Agricultural Sciences
Maize
Agricultural research
Plant Breeding
Zea mays
Plant height
Anthesis time
Grain yield
genotypes
KBLUP
GBLUP
GSSI
Agricultural Sciences
Maize
Agricultural research
Plant Breeding
Zea mays
Plant height
Anthesis time
Grain yield
genotypes
KBLUP
GBLUP
GSSI
spellingShingle Agricultural Sciences
Maize
Agricultural research
Plant Breeding
Zea mays
Plant height
Anthesis time
Grain yield
genotypes
KBLUP
GBLUP
GSSI
Agricultural Sciences
Maize
Agricultural research
Plant Breeding
Zea mays
Plant height
Anthesis time
Grain yield
genotypes
KBLUP
GBLUP
GSSI
Lopez-Cruz, Marco
Beyene, Yoseph
Gowda, Manje
Crossa, Jose
Pérez-Rodríguez, Paulino
de los Campos, Gustavo
Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
description Genomic prediction models may be used in plant breeding pipelines. They are often calibrated using multi-generation data and there is an open question of whether all available data or a subset of it should be used to calibrate genomic prediction models. Therefore, a study was undertaken to determine whether combining sparse selection indexes (SSIs) and kernel methods could further improve prediction accuracy when training genomic models using multi-generation data. This dataset contains the genotypic and phenotypic data from CIMMYT maize doubled haploid lines that were used to perform the analyses. The results of the analyses are presented in the accompanying article.
author2 Dreher, Kate
author_facet Dreher, Kate
Lopez-Cruz, Marco
Beyene, Yoseph
Gowda, Manje
Crossa, Jose
Pérez-Rodríguez, Paulino
de los Campos, Gustavo
format Genotypic data
topic_facet Agricultural Sciences
Maize
Agricultural research
Plant Breeding
Zea mays
Plant height
Anthesis time
Grain yield
genotypes
KBLUP
GBLUP
GSSI
author Lopez-Cruz, Marco
Beyene, Yoseph
Gowda, Manje
Crossa, Jose
Pérez-Rodríguez, Paulino
de los Campos, Gustavo
author_sort Lopez-Cruz, Marco
title Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
title_short Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
title_full Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
title_fullStr Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
title_full_unstemmed Replication Data for: Multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
title_sort replication data for: multi-generation genomic prediction of maize yield using parametric and non-parametric sparse selection indices
publisher CIMMYT Research Data & Software Repository Network
publishDate 2021
url https://hdl.handle.net/11529/10548608
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