Towards unraveling macroecological patterns in rhizosphere microbiomes
It is generally accepted that plants locally influence the composition and activity of their rhizosphere microbiome, and that rhizosphere community assembly further involves a hierarchy of constraints with varying strengths across spatial and temporal scales. However, our knowledge of rhizosphere microbiomes is largely based on single-location and time-point studies. Consequently, it re- mains difficult to predict patterns at large landscape scales, and we lack a clear understanding of how the rhizosphere microbiome forms and is maintained by drivers beyond the influence of the plant. By synthesizing recent literature and collating data on rhizosphere microbiomes, we point out the opportunities and challenges offered by advances in molecular biology, bioinformatics, and data availability. Specifically, we highlight the use of exact sequence variants, coupled with existing and newly generated data to decipher the rules of rhizosphere community assembly across large spatial and taxonomic scales.
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Subjects: | P34 - Biologie du sol, F01 - Culture des plantes, rhizosphère, micro-organisme du sol, http://aims.fao.org/aos/agrovoc/c_6569, http://aims.fao.org/aos/agrovoc/c_36167, |
Online Access: | http://agritrop.cirad.fr/600615/ http://agritrop.cirad.fr/600615/1/600615.pdf |
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dig-cirad-fr-6006152024-01-29T04:04:22Z http://agritrop.cirad.fr/600615/ http://agritrop.cirad.fr/600615/ Towards unraveling macroecological patterns in rhizosphere microbiomes. Brunel Caroline, Pouteau Robin, Dawson Wayne, Pester Michael, Ramirez Kelly S., van Kleunen Mark. 2020. Trends in Plant Science, 25 (10) : 1017-1029.https://doi.org/10.1016/j.tplants.2020.04.015 <https://doi.org/10.1016/j.tplants.2020.04.015> Towards unraveling macroecological patterns in rhizosphere microbiomes Brunel, Caroline Pouteau, Robin Dawson, Wayne Pester, Michael Ramirez, Kelly S. van Kleunen, Mark eng 2020 Trends in Plant Science P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 It is generally accepted that plants locally influence the composition and activity of their rhizosphere microbiome, and that rhizosphere community assembly further involves a hierarchy of constraints with varying strengths across spatial and temporal scales. However, our knowledge of rhizosphere microbiomes is largely based on single-location and time-point studies. Consequently, it re- mains difficult to predict patterns at large landscape scales, and we lack a clear understanding of how the rhizosphere microbiome forms and is maintained by drivers beyond the influence of the plant. By synthesizing recent literature and collating data on rhizosphere microbiomes, we point out the opportunities and challenges offered by advances in molecular biology, bioinformatics, and data availability. Specifically, we highlight the use of exact sequence variants, coupled with existing and newly generated data to decipher the rules of rhizosphere community assembly across large spatial and taxonomic scales. article info:eu-repo/semantics/article Journal Article info:eu-repo/semantics/publishedVersion http://agritrop.cirad.fr/600615/1/600615.pdf text cc_by_nc_nd info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-nd/4.0/ https://doi.org/10.1016/j.tplants.2020.04.015 10.1016/j.tplants.2020.04.015 info:eu-repo/semantics/altIdentifier/doi/10.1016/j.tplants.2020.04.015 info:eu-repo/semantics/altIdentifier/purl/https://doi.org/10.1016/j.tplants.2020.04.015 |
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P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 |
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P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 Brunel, Caroline Pouteau, Robin Dawson, Wayne Pester, Michael Ramirez, Kelly S. van Kleunen, Mark Towards unraveling macroecological patterns in rhizosphere microbiomes |
description |
It is generally accepted that plants locally influence the composition and activity of their rhizosphere microbiome, and that rhizosphere community assembly further involves a hierarchy of constraints with varying strengths across spatial and temporal scales. However, our knowledge of rhizosphere microbiomes is largely based on single-location and time-point studies. Consequently, it re- mains difficult to predict patterns at large landscape scales, and we lack a clear understanding of how the rhizosphere microbiome forms and is maintained by drivers beyond the influence of the plant. By synthesizing recent literature and collating data on rhizosphere microbiomes, we point out the opportunities and challenges offered by advances in molecular biology, bioinformatics, and data availability. Specifically, we highlight the use of exact sequence variants, coupled with existing and newly generated data to decipher the rules of rhizosphere community assembly across large spatial and taxonomic scales. |
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P34 - Biologie du sol F01 - Culture des plantes rhizosphère micro-organisme du sol http://aims.fao.org/aos/agrovoc/c_6569 http://aims.fao.org/aos/agrovoc/c_36167 |
author |
Brunel, Caroline Pouteau, Robin Dawson, Wayne Pester, Michael Ramirez, Kelly S. van Kleunen, Mark |
author_facet |
Brunel, Caroline Pouteau, Robin Dawson, Wayne Pester, Michael Ramirez, Kelly S. van Kleunen, Mark |
author_sort |
Brunel, Caroline |
title |
Towards unraveling macroecological patterns in rhizosphere microbiomes |
title_short |
Towards unraveling macroecological patterns in rhizosphere microbiomes |
title_full |
Towards unraveling macroecological patterns in rhizosphere microbiomes |
title_fullStr |
Towards unraveling macroecological patterns in rhizosphere microbiomes |
title_full_unstemmed |
Towards unraveling macroecological patterns in rhizosphere microbiomes |
title_sort |
towards unraveling macroecological patterns in rhizosphere microbiomes |
url |
http://agritrop.cirad.fr/600615/ http://agritrop.cirad.fr/600615/1/600615.pdf |
work_keys_str_mv |
AT brunelcaroline towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes AT pouteaurobin towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes AT dawsonwayne towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes AT pestermichael towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes AT ramirezkellys towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes AT vankleunenmark towardsunravelingmacroecologicalpatternsinrhizospheremicrobiomes |
_version_ |
1792500324258283520 |