The URGI plants and bio-agressors genomics annotation system
The URGI genomic annotation platform, developed in the framework of the GnpAnnot project, relies on well known GMOD tools (http://gmod.org): Apollo, Chado and GBrowse. Apollo is the graphical interface for visualization and annotation edition allowing curators to edit their genes according to evidences (transcript and protein similarity, comparative genomics). Manual annotations (gene curation validated/in progress) are saved in a dedicated Chado database and shared at the same time with other community annotations members. Validated genes/pseudogenes are then committed in the second Chado database accessible by GBrowse.
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| Main Authors: | , , , , , , , , |
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| Format: | conference_item biblioteca |
| Language: | eng |
| Published: |
s.n.
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| Subjects: | F30 - Génétique et amélioration des plantes, C30 - Documentation et information, H10 - Ravageurs des plantes, |
| Online Access: | http://agritrop.cirad.fr/552317/ http://agritrop.cirad.fr/552317/1/document_552317.pdf |
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| Summary: | The URGI genomic annotation platform, developed in the framework of the GnpAnnot project, relies on well known GMOD tools (http://gmod.org): Apollo, Chado and GBrowse. Apollo is the graphical interface for visualization and annotation edition allowing curators to edit their genes according to evidences (transcript and protein similarity, comparative genomics). Manual annotations (gene curation validated/in progress) are saved in a dedicated Chado database and shared at the same time with other community annotations members. Validated genes/pseudogenes are then committed in the second Chado database accessible by GBrowse. |
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