A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines.
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression.
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Format: | Artigo de periódico biblioteca |
Language: | English eng |
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2012-06-18
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Subjects: | Bioinformática, Expressão genética, Soja, Gene, Soybeans, Genes, Bioinformatics, Gene expression, |
Online Access: | http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 |
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dig-alice-doc-9265862017-08-16T00:35:01Z A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP. Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. 2012-06-18T11:11:11Z 2012-06-18T11:11:11Z 2012-06-18 2012 2017-07-13T11:11:11Z Artigo de periódico Genetics and Molecular Biology, Ribeirão Preto, v. 35, n. 1, suppl., p. 203-211, May 2012. http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 en eng openAccess |
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Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression |
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Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
description |
The Genosoja consortium is an initiative to integrate different omics research approaches carried out in Brazil. Basically, the aim of the project is to improve the plant by identifying genes involved in responses against stresses that affect domestic production, like drought stress and Asian Rust fungal disease. To do so, the project generated several types of sequence data using different methodologies, most of them sequenced by next generation sequencers. The initial stage of the project is highly dependent on bioinformatics analysis, providing suitable tools and integrated databases. In this work, we describe the main features of the Genosoja web database, including the pipelines to analyze some kinds of data (ESTs, SuperSAGE, microRNAs, subtractive cDNA libraries), as well as web interfaces to access information about soybean gene annotation and expression. |
author2 |
LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP. |
author_facet |
LEANDRO COSTA DO NASCIMENTO, UNICAMP; GUSTAVO GILSON LACERDA COSTA, UNICAMP; ELISEU BINNECK, CNPSO; GONÇALO AMARANTE GUIMARÃES PEREIRA, UNICAMP; MARCELO FALSARELLA CARAZZOLLE, UNICAMP. NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. |
format |
Artigo de periódico |
topic_facet |
Bioinformática Expressão genética Soja Gene Soybeans Genes Bioinformatics Gene expression |
author |
NASCIMENTO, L. C. do COSTA, G. G. L. BINNECK, E. PEREIRA, G. A. G. CARAZZOLLE, M. F. |
author_sort |
NASCIMENTO, L. C. do |
title |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_short |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_full |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_fullStr |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_full_unstemmed |
A web-based bioinformatics interface applied to the GENOSOJA Project: databases and pipelines. |
title_sort |
web-based bioinformatics interface applied to the genosoja project: databases and pipelines. |
publishDate |
2012-06-18 |
url |
http://www.alice.cnptia.embrapa.br/alice/handle/doc/926586 |
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