COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data

Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO(2)flux, commonly though imprecisely termed soil respiration (R-S), is one of the largest carbon fluxes in the Earth system. An increasing number of high-frequencyR(S)measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open-source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measuredR(S), the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.

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Main Authors: Bond-Lamberty, Ben, Christianson, Danielle S., Malhotra, Avni, Pennington, Stephanie C., Sihi, Debjani, AghaKouchak, Amir, Anjileli, Hassan, Arain, M. Altaf, Armesto Zamudio, Juan, Ashraf, Samaneh, Ataka, Mioko, Baldocchi, Dennis, Black, Thomas Andrew, Buchmann, Nina, Carbone, Mariah S., Chang, Shih-Chieh, Crill, Patrick, Curtis, Peter S., Davidson, Eric A., Desai, Ankur R., Drake, John E., El-Madany, Tarek S., Gavazzi, Michael, Görres, Carolyn Monika, Gough, Christopher M., Goulden, Michael, Gregg, Jillian, Gutiérrez del Arroyo, Omar, He, Jin-Sheng, Hirano, Takashi, Hopple, Anya, Hughes, Holly, Järveoja, Järvi, Jassal, Rachhpal, Jian, Jinshi, Kan, Haiming, Kaye, Jason, Kominami, Yuji, Liang, Naishen, Lipson, David, Macdonald, Catriona A., Maseyk, Kadmiel, Mathes, Kayla, Mauritz, Marguerite, Mayes, Melanie A., McNulty, Steve, Miao, Guofang, Migliavacca, Mirco, Miller, Scott, Miniat, Chelcy F., Nietz, Jennifer G., Nilsson, Mats B., Noormets, Asko, Norouzi, Hamidreza, O’Connell, Christine S., Osborne, Bruce, Oyonarte, Cecilio, Pang, Zhuo, Peichl, Matthias, Pendall, Elise, Pérez Quezada, Jorge, Phillips, Claire L., Phillips, Richard P., Raich, James W., Renchon, Alexandre A., Ruehr, Nadine K., Sánchez Cañete, Enrique P., Saunders, Matthew, Savage, Kathleen E., Schrumpf, Marion, Scott, Russell L., Seibt, Ulli, Silver, Whendee L, Sun, Wu, Szutu, Daphne, Takagi, Kentaro, Takagi, Masahiro, Teramoto, Munemasa, Tjoelker, Mark G., Trumbore, Susan, Ueyama, Masahito, Vargas, Rodrigo, Varner, Ruth K., Verfaillie, Joseph, Vogel, Christoph, Wang, Jinsong, Winston, Greg, Wood, Tana E., Wu, Juying, Wutzler, Thomas, Zeng, Jiye, Zha, Tianshan, Zhang, Quan, Zou, Junliang
Format: Artículo de revista biblioteca
Language:English
Published: Wiley 2020
Subjects:Carbon dioxide, Greenhouse gases, Methane, Open data, Open science, Soil respiration,
Online Access:https://repositorio.uchile.cl/handle/2250/178632
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id dig-uchile-cl-2250-178632
record_format koha
institution UCHILE CL
collection DSpace
country Chile
countrycode CL
component Bibliográfico
access En linea
databasecode dig-uchile-cl
tag biblioteca
region America del Sur
libraryname Dirección de Servicios de Información y Bibliotecas de la UCHILE
language English
topic Carbon dioxide
Greenhouse gases
Methane
Open data
Open science
Soil respiration
Carbon dioxide
Greenhouse gases
Methane
Open data
Open science
Soil respiration
spellingShingle Carbon dioxide
Greenhouse gases
Methane
Open data
Open science
Soil respiration
Carbon dioxide
Greenhouse gases
Methane
Open data
Open science
Soil respiration
Bond-Lamberty, Ben
Christianson, Danielle S.
Malhotra, Avni
Pennington, Stephanie C.
Sihi, Debjani
AghaKouchak, Amir
Anjileli, Hassan
Arain, M. Altaf
Armesto Zamudio, Juan
Ashraf, Samaneh
Ataka, Mioko
Baldocchi, Dennis
Black, Thomas Andrew
Buchmann, Nina
Carbone, Mariah S.
Chang, Shih-Chieh
Crill, Patrick
Curtis, Peter S.
Davidson, Eric A.
Desai, Ankur R.
Drake, John E.
El-Madany, Tarek S.
Gavazzi, Michael
Görres, Carolyn Monika
Gough, Christopher M.
Goulden, Michael
Gregg, Jillian
Gutiérrez del Arroyo, Omar
He, Jin-Sheng
Hirano, Takashi
Hopple, Anya
Hughes, Holly
Järveoja, Järvi
Jassal, Rachhpal
Jian, Jinshi
Kan, Haiming
Kaye, Jason
Kominami, Yuji
Liang, Naishen
Lipson, David
Macdonald, Catriona A.
Maseyk, Kadmiel
Mathes, Kayla
Mauritz, Marguerite
Mayes, Melanie A.
McNulty, Steve
Miao, Guofang
Migliavacca, Mirco
Miller, Scott
Miniat, Chelcy F.
Nietz, Jennifer G.
Nilsson, Mats B.
Noormets, Asko
Norouzi, Hamidreza
O’Connell, Christine S.
Osborne, Bruce
Oyonarte, Cecilio
Pang, Zhuo
Peichl, Matthias
Pendall, Elise
Pérez Quezada, Jorge
Phillips, Claire L.
Phillips, Richard P.
Raich, James W.
Renchon, Alexandre A.
Ruehr, Nadine K.
Sánchez Cañete, Enrique P.
Saunders, Matthew
Savage, Kathleen E.
Schrumpf, Marion
Scott, Russell L.
Seibt, Ulli
Silver, Whendee L
Sun, Wu
Szutu, Daphne
Takagi, Kentaro
Takagi, Masahiro
Teramoto, Munemasa
Tjoelker, Mark G.
Trumbore, Susan
Ueyama, Masahito
Vargas, Rodrigo
Varner, Ruth K.
Verfaillie, Joseph
Vogel, Christoph
Wang, Jinsong
Winston, Greg
Wood, Tana E.
Wu, Juying
Wutzler, Thomas
Zeng, Jiye
Zha, Tianshan
Zhang, Quan
Zou, Junliang
COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
description Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO(2)flux, commonly though imprecisely termed soil respiration (R-S), is one of the largest carbon fluxes in the Earth system. An increasing number of high-frequencyR(S)measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open-source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measuredR(S), the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package.
format Artículo de revista
topic_facet Carbon dioxide
Greenhouse gases
Methane
Open data
Open science
Soil respiration
author Bond-Lamberty, Ben
Christianson, Danielle S.
Malhotra, Avni
Pennington, Stephanie C.
Sihi, Debjani
AghaKouchak, Amir
Anjileli, Hassan
Arain, M. Altaf
Armesto Zamudio, Juan
Ashraf, Samaneh
Ataka, Mioko
Baldocchi, Dennis
Black, Thomas Andrew
Buchmann, Nina
Carbone, Mariah S.
Chang, Shih-Chieh
Crill, Patrick
Curtis, Peter S.
Davidson, Eric A.
Desai, Ankur R.
Drake, John E.
El-Madany, Tarek S.
Gavazzi, Michael
Görres, Carolyn Monika
Gough, Christopher M.
Goulden, Michael
Gregg, Jillian
Gutiérrez del Arroyo, Omar
He, Jin-Sheng
Hirano, Takashi
Hopple, Anya
Hughes, Holly
Järveoja, Järvi
Jassal, Rachhpal
Jian, Jinshi
Kan, Haiming
Kaye, Jason
Kominami, Yuji
Liang, Naishen
Lipson, David
Macdonald, Catriona A.
Maseyk, Kadmiel
Mathes, Kayla
Mauritz, Marguerite
Mayes, Melanie A.
McNulty, Steve
Miao, Guofang
Migliavacca, Mirco
Miller, Scott
Miniat, Chelcy F.
Nietz, Jennifer G.
Nilsson, Mats B.
Noormets, Asko
Norouzi, Hamidreza
O’Connell, Christine S.
Osborne, Bruce
Oyonarte, Cecilio
Pang, Zhuo
Peichl, Matthias
Pendall, Elise
Pérez Quezada, Jorge
Phillips, Claire L.
Phillips, Richard P.
Raich, James W.
Renchon, Alexandre A.
Ruehr, Nadine K.
Sánchez Cañete, Enrique P.
Saunders, Matthew
Savage, Kathleen E.
Schrumpf, Marion
Scott, Russell L.
Seibt, Ulli
Silver, Whendee L
Sun, Wu
Szutu, Daphne
Takagi, Kentaro
Takagi, Masahiro
Teramoto, Munemasa
Tjoelker, Mark G.
Trumbore, Susan
Ueyama, Masahito
Vargas, Rodrigo
Varner, Ruth K.
Verfaillie, Joseph
Vogel, Christoph
Wang, Jinsong
Winston, Greg
Wood, Tana E.
Wu, Juying
Wutzler, Thomas
Zeng, Jiye
Zha, Tianshan
Zhang, Quan
Zou, Junliang
author_facet Bond-Lamberty, Ben
Christianson, Danielle S.
Malhotra, Avni
Pennington, Stephanie C.
Sihi, Debjani
AghaKouchak, Amir
Anjileli, Hassan
Arain, M. Altaf
Armesto Zamudio, Juan
Ashraf, Samaneh
Ataka, Mioko
Baldocchi, Dennis
Black, Thomas Andrew
Buchmann, Nina
Carbone, Mariah S.
Chang, Shih-Chieh
Crill, Patrick
Curtis, Peter S.
Davidson, Eric A.
Desai, Ankur R.
Drake, John E.
El-Madany, Tarek S.
Gavazzi, Michael
Görres, Carolyn Monika
Gough, Christopher M.
Goulden, Michael
Gregg, Jillian
Gutiérrez del Arroyo, Omar
He, Jin-Sheng
Hirano, Takashi
Hopple, Anya
Hughes, Holly
Järveoja, Järvi
Jassal, Rachhpal
Jian, Jinshi
Kan, Haiming
Kaye, Jason
Kominami, Yuji
Liang, Naishen
Lipson, David
Macdonald, Catriona A.
Maseyk, Kadmiel
Mathes, Kayla
Mauritz, Marguerite
Mayes, Melanie A.
McNulty, Steve
Miao, Guofang
Migliavacca, Mirco
Miller, Scott
Miniat, Chelcy F.
Nietz, Jennifer G.
Nilsson, Mats B.
Noormets, Asko
Norouzi, Hamidreza
O’Connell, Christine S.
Osborne, Bruce
Oyonarte, Cecilio
Pang, Zhuo
Peichl, Matthias
Pendall, Elise
Pérez Quezada, Jorge
Phillips, Claire L.
Phillips, Richard P.
Raich, James W.
Renchon, Alexandre A.
Ruehr, Nadine K.
Sánchez Cañete, Enrique P.
Saunders, Matthew
Savage, Kathleen E.
Schrumpf, Marion
Scott, Russell L.
Seibt, Ulli
Silver, Whendee L
Sun, Wu
Szutu, Daphne
Takagi, Kentaro
Takagi, Masahiro
Teramoto, Munemasa
Tjoelker, Mark G.
Trumbore, Susan
Ueyama, Masahito
Vargas, Rodrigo
Varner, Ruth K.
Verfaillie, Joseph
Vogel, Christoph
Wang, Jinsong
Winston, Greg
Wood, Tana E.
Wu, Juying
Wutzler, Thomas
Zeng, Jiye
Zha, Tianshan
Zhang, Quan
Zou, Junliang
author_sort Bond-Lamberty, Ben
title COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
title_short COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
title_full COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
title_fullStr COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
title_full_unstemmed COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
title_sort cosore: a community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data
publisher Wiley
publishDate 2020
url https://repositorio.uchile.cl/handle/2250/178632
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spelling dig-uchile-cl-2250-1786322022-12-20T17:28:06Z COSORE: A community database for continuous soil respiration and other soil-atmosphere greenhouse gas flux data Bond-Lamberty, Ben Christianson, Danielle S. Malhotra, Avni Pennington, Stephanie C. Sihi, Debjani AghaKouchak, Amir Anjileli, Hassan Arain, M. Altaf Armesto Zamudio, Juan Ashraf, Samaneh Ataka, Mioko Baldocchi, Dennis Black, Thomas Andrew Buchmann, Nina Carbone, Mariah S. Chang, Shih-Chieh Crill, Patrick Curtis, Peter S. Davidson, Eric A. Desai, Ankur R. Drake, John E. El-Madany, Tarek S. Gavazzi, Michael Görres, Carolyn Monika Gough, Christopher M. Goulden, Michael Gregg, Jillian Gutiérrez del Arroyo, Omar He, Jin-Sheng Hirano, Takashi Hopple, Anya Hughes, Holly Järveoja, Järvi Jassal, Rachhpal Jian, Jinshi Kan, Haiming Kaye, Jason Kominami, Yuji Liang, Naishen Lipson, David Macdonald, Catriona A. Maseyk, Kadmiel Mathes, Kayla Mauritz, Marguerite Mayes, Melanie A. McNulty, Steve Miao, Guofang Migliavacca, Mirco Miller, Scott Miniat, Chelcy F. Nietz, Jennifer G. Nilsson, Mats B. Noormets, Asko Norouzi, Hamidreza O’Connell, Christine S. Osborne, Bruce Oyonarte, Cecilio Pang, Zhuo Peichl, Matthias Pendall, Elise Pérez Quezada, Jorge Phillips, Claire L. Phillips, Richard P. Raich, James W. Renchon, Alexandre A. Ruehr, Nadine K. Sánchez Cañete, Enrique P. Saunders, Matthew Savage, Kathleen E. Schrumpf, Marion Scott, Russell L. Seibt, Ulli Silver, Whendee L Sun, Wu Szutu, Daphne Takagi, Kentaro Takagi, Masahiro Teramoto, Munemasa Tjoelker, Mark G. Trumbore, Susan Ueyama, Masahito Vargas, Rodrigo Varner, Ruth K. Verfaillie, Joseph Vogel, Christoph Wang, Jinsong Winston, Greg Wood, Tana E. Wu, Juying Wutzler, Thomas Zeng, Jiye Zha, Tianshan Zhang, Quan Zou, Junliang Carbon dioxide Greenhouse gases Methane Open data Open science Soil respiration Globally, soils store two to three times as much carbon as currently resides in the atmosphere, and it is critical to understand how soil greenhouse gas (GHG) emissions and uptake will respond to ongoing climate change. In particular, the soil-to-atmosphere CO(2)flux, commonly though imprecisely termed soil respiration (R-S), is one of the largest carbon fluxes in the Earth system. An increasing number of high-frequencyR(S)measurements (typically, from an automated system with hourly sampling) have been made over the last two decades; an increasing number of methane measurements are being made with such systems as well. Such high frequency data are an invaluable resource for understanding GHG fluxes, but lack a central database or repository. Here we describe the lightweight, open-source COSORE (COntinuous SOil REspiration) database and software, that focuses on automated, continuous and long-term GHG flux datasets, and is intended to serve as a community resource for earth sciences, climate change syntheses and model evaluation. Contributed datasets are mapped to a single, consistent standard, with metadata on contributors, geographic location, measurement conditions and ancillary data. The design emphasizes the importance of reproducibility, scientific transparency and open access to data. While being oriented towards continuously measuredR(S), the database design accommodates other soil-atmosphere measurements (e.g. ecosystem respiration, chamber-measured net ecosystem exchange, methane fluxes) as well as experimental treatments (heterotrophic only, etc.). We give brief examples of the types of analyses possible using this new community resource and describe its accompanying R software package. United States Department of Energy (DOE) DE-AC02-05CH11231 DE-SC0006741 TES-DE-FOA-0000749 DE-FG02-05ER64048 Swiss National Science Foundation (SNSF) European Commission 20FI20_173691 China Scholarship Council 201206300050 University College Dublin Special Project on Hi-Tech Innovation Capacity KJCX20200301 Beijing Academy of Agriculture and Forestry Sciences KJCX20200301 United States Department of Agriculture (USDA) 2014-67003-22073 National Science Foundation (NSF) DEB-1457805 DEB-0236502 DEB-0703561 DBI-1457897 Ministry of Science and Technology Australian Research Council DP170102766 DP110105102 DP160102452 United States Department of Agriculture (USDA) USDA Agricultural Research Service 2072-12620-001 Swedish Infrastructure for Ecosystem Science; Arctic Challenge for Sustainability II JPMXD1420318865 Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT) Japan Society for the Promotion of Science 23681004 26701002 National Commission for Scientific and Technological Research FONDECYT 1171239 FONDEQUIP AIC-37 AFB170008 NSFC-NSF 51861125102 2021-03-10T14:17:49Z 2021-03-10T14:17:49Z 2020 Artículo de revista Glob. Change Biol. 2020;26:7268–7283 10.1111/gcb.15353 https://repositorio.uchile.cl/handle/2250/178632 en Attribution-NonCommercial-NoDerivs 3.0 Chile http://creativecommons.org/licenses/by-nc-nd/3.0/cl/ application/pdf Wiley Global Change Biology