Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera

[Background] Rhinorhipidae Lawrence, 1988 is an enigmatic beetle family represented by a single species, Rhinorhipus tamborinensis Lawrence, 1988, from Australia, with poorly established affinities near the superfamily Elateroidea (click beetles, soldier beetles and fireflies) or the more inclusive series (infraorder) Elateriformia. Its evolutionary position may inform the basal relationships of the suborder Polyphaga, the largest clade of Coleoptera. [Results] We analyzed four densely sampled DNA datasets of major coleopteran lineages for mitogenomes, rRNA genes and single copy nuclear genes. Additionally, genome sequencing was used for incorporation of R. tamborinensis into a set of 4220 orthologs for 24 terminals representing 12 polyphagan superfamilies. Topologies differed to various degrees, but all consistently refute the proposed placement of Rhinorhipidae in Elateroidea and instead indicate either sister relationships with other Elateriformia, frequently together with Nosodendridae, another divergent small family hitherto placed in Derodontoidea, or in an isolated position among the deepest lineages of Polyphaga. The phylogenomic analyses recovered Rhinorhipus in a sister position to all other Elateriformia composed of five superfamilies. Therefore, we erect the new superfamily Rhinorhipoidea Lawrence, 1988, stat. Nov., with the type-family Rhinorhipidae. The origins of the Rhinorhipidae were dated to the Upper Triassic/Lower Jurassic at the very early phase of polyphagan diversification. [Conclusions] Thus, Rhinorhipidae adds another example to several recently recognized ancient relict lineages which are interspersed within contemporaneous hugely species-rich lineages of Coleoptera.

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Main Authors: Kusy, Dominik, Motyka, Michal, Andújar, Carmelo, Bocek, Matej, Masek, Michal, Sklenarova, Katerina, Kokas, Filip, Bocakova, Milada, Vogler, Alfried P., Bocak, Ladislav
Other Authors: Leverhulme Trust
Format: artículo biblioteca
Published: BioMed Central 2018-05-02
Subjects:New superfamily, Elateriformia, Phylotranscriptomics, Molecular phylogeny, Triassic, Rhinorhipidae,
Online Access:http://hdl.handle.net/10261/179738
http://dx.doi.org/10.13039/501100000275
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spelling dig-ipna-es-10261-1797382021-12-27T16:34:33Z Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera Kusy, Dominik Motyka, Michal Andújar, Carmelo Bocek, Matej Masek, Michal Sklenarova, Katerina Kokas, Filip Bocakova, Milada Vogler, Alfried P. Bocak, Ladislav Leverhulme Trust New superfamily Elateriformia Phylotranscriptomics Molecular phylogeny Triassic Rhinorhipidae [Background] Rhinorhipidae Lawrence, 1988 is an enigmatic beetle family represented by a single species, Rhinorhipus tamborinensis Lawrence, 1988, from Australia, with poorly established affinities near the superfamily Elateroidea (click beetles, soldier beetles and fireflies) or the more inclusive series (infraorder) Elateriformia. Its evolutionary position may inform the basal relationships of the suborder Polyphaga, the largest clade of Coleoptera. [Results] We analyzed four densely sampled DNA datasets of major coleopteran lineages for mitogenomes, rRNA genes and single copy nuclear genes. Additionally, genome sequencing was used for incorporation of R. tamborinensis into a set of 4220 orthologs for 24 terminals representing 12 polyphagan superfamilies. Topologies differed to various degrees, but all consistently refute the proposed placement of Rhinorhipidae in Elateroidea and instead indicate either sister relationships with other Elateriformia, frequently together with Nosodendridae, another divergent small family hitherto placed in Derodontoidea, or in an isolated position among the deepest lineages of Polyphaga. The phylogenomic analyses recovered Rhinorhipus in a sister position to all other Elateriformia composed of five superfamilies. Therefore, we erect the new superfamily Rhinorhipoidea Lawrence, 1988, stat. Nov., with the type-family Rhinorhipidae. The origins of the Rhinorhipidae were dated to the Upper Triassic/Lower Jurassic at the very early phase of polyphagan diversification. [Conclusions] Thus, Rhinorhipidae adds another example to several recently recognized ancient relict lineages which are interspersed within contemporaneous hugely species-rich lineages of Coleoptera. The study was funded by the IGA and GACR projects (PrF2018, 18-14942S to L.B., D.K., M.Mo. and Ma.B.), Leverhulme Trust (F/00696/P to A.P.V. and L.B.) and the NHM Biodiversity Initiative. Peer Reviewed 2019-04-09T15:48:14Z 2019-04-09T15:48:14Z 2018-05-02 2019-04-09T15:48:15Z artículo http://purl.org/coar/resource_type/c_6501 doi: 10.1186/s12983-018-0262-0 e-issn: 1742-9994 Frontiers in Zoology 15:21 (2018) http://hdl.handle.net/10261/179738 10.1186/s12983-018-0262-0 http://dx.doi.org/10.13039/501100000275 29743928 Publisher's version https://doi.org/10.1186/s12983-018-0262-0 Sí open BioMed Central
institution IPNA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-ipna-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IPNA España
topic New superfamily
Elateriformia
Phylotranscriptomics
Molecular phylogeny
Triassic
Rhinorhipidae
New superfamily
Elateriformia
Phylotranscriptomics
Molecular phylogeny
Triassic
Rhinorhipidae
spellingShingle New superfamily
Elateriformia
Phylotranscriptomics
Molecular phylogeny
Triassic
Rhinorhipidae
New superfamily
Elateriformia
Phylotranscriptomics
Molecular phylogeny
Triassic
Rhinorhipidae
Kusy, Dominik
Motyka, Michal
Andújar, Carmelo
Bocek, Matej
Masek, Michal
Sklenarova, Katerina
Kokas, Filip
Bocakova, Milada
Vogler, Alfried P.
Bocak, Ladislav
Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
description [Background] Rhinorhipidae Lawrence, 1988 is an enigmatic beetle family represented by a single species, Rhinorhipus tamborinensis Lawrence, 1988, from Australia, with poorly established affinities near the superfamily Elateroidea (click beetles, soldier beetles and fireflies) or the more inclusive series (infraorder) Elateriformia. Its evolutionary position may inform the basal relationships of the suborder Polyphaga, the largest clade of Coleoptera. [Results] We analyzed four densely sampled DNA datasets of major coleopteran lineages for mitogenomes, rRNA genes and single copy nuclear genes. Additionally, genome sequencing was used for incorporation of R. tamborinensis into a set of 4220 orthologs for 24 terminals representing 12 polyphagan superfamilies. Topologies differed to various degrees, but all consistently refute the proposed placement of Rhinorhipidae in Elateroidea and instead indicate either sister relationships with other Elateriformia, frequently together with Nosodendridae, another divergent small family hitherto placed in Derodontoidea, or in an isolated position among the deepest lineages of Polyphaga. The phylogenomic analyses recovered Rhinorhipus in a sister position to all other Elateriformia composed of five superfamilies. Therefore, we erect the new superfamily Rhinorhipoidea Lawrence, 1988, stat. Nov., with the type-family Rhinorhipidae. The origins of the Rhinorhipidae were dated to the Upper Triassic/Lower Jurassic at the very early phase of polyphagan diversification. [Conclusions] Thus, Rhinorhipidae adds another example to several recently recognized ancient relict lineages which are interspersed within contemporaneous hugely species-rich lineages of Coleoptera.
author2 Leverhulme Trust
author_facet Leverhulme Trust
Kusy, Dominik
Motyka, Michal
Andújar, Carmelo
Bocek, Matej
Masek, Michal
Sklenarova, Katerina
Kokas, Filip
Bocakova, Milada
Vogler, Alfried P.
Bocak, Ladislav
format artículo
topic_facet New superfamily
Elateriformia
Phylotranscriptomics
Molecular phylogeny
Triassic
Rhinorhipidae
author Kusy, Dominik
Motyka, Michal
Andújar, Carmelo
Bocek, Matej
Masek, Michal
Sklenarova, Katerina
Kokas, Filip
Bocakova, Milada
Vogler, Alfried P.
Bocak, Ladislav
author_sort Kusy, Dominik
title Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
title_short Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
title_full Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
title_fullStr Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
title_full_unstemmed Genome sequencing of Rhinorhipus Lawrence exposes an early branch of the Coleoptera
title_sort genome sequencing of rhinorhipus lawrence exposes an early branch of the coleoptera
publisher BioMed Central
publishDate 2018-05-02
url http://hdl.handle.net/10261/179738
http://dx.doi.org/10.13039/501100000275
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