Integrative analysis of multimodal mass spectrometry data in MZmine 3
3 Pág.
Saved in:
| Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Other Authors: | |
| Format: | carta biblioteca |
| Language: | English |
| Published: |
Nature Publishing Group
2023-03-01
|
| Online Access: | http://hdl.handle.net/10261/329968 https://api.elsevier.com/content/abstract/scopus_id/85149022457 |
| Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
| id |
dig-inia-es-10261-329968 |
|---|---|
| record_format |
koha |
| institution |
INIA ES |
| collection |
DSpace |
| country |
España |
| countrycode |
ES |
| component |
Bibliográfico |
| access |
En linea |
| databasecode |
dig-inia-es |
| tag |
biblioteca |
| region |
Europa del Sur |
| libraryname |
Biblioteca del INIA España |
| language |
English |
| description |
3 Pág. |
| author2 |
Czech Science Foundation |
| author_facet |
Czech Science Foundation Schmid, Robin Heuckeroth, Steffen Korf, Ansgar Smirnov, Aleksandr Myers, Owen Dyrlund, Thomas S. Bushuiev, Roman Murray, Kevin J Hoffmann, Nils Lu, Miaoshan Sarvepalli, Abinesh Zhang, Zheng Fleischauer, Markus Dührkop, Kai Wesner, Mark Hoogstra, Shawn J. Rudt, Edward Mokshyna, Olena Brungs, Corinna Ponomarov, Kirill Mutabdžija, Lana Damiani, Tito Pudney, Chris J Earll, Mark Helmer, Patrick O Fallon, Timothy R. Schulze, Tobias Rivas-Ubach, Albert Bilbao, A. Richter, Henning Nothias, Louis-Félix Wang, Mingxun Orešič, Matej Weng, Jing-Ke Böcker, Sebastian Jeibmann, Astrid Hayen, Heiko Karst, Uwe Dorrestein, Pieter C. Petras, Daniel Du, Xiuxia Pluskal, Tomáš |
| format |
carta |
| author |
Schmid, Robin Heuckeroth, Steffen Korf, Ansgar Smirnov, Aleksandr Myers, Owen Dyrlund, Thomas S. Bushuiev, Roman Murray, Kevin J Hoffmann, Nils Lu, Miaoshan Sarvepalli, Abinesh Zhang, Zheng Fleischauer, Markus Dührkop, Kai Wesner, Mark Hoogstra, Shawn J. Rudt, Edward Mokshyna, Olena Brungs, Corinna Ponomarov, Kirill Mutabdžija, Lana Damiani, Tito Pudney, Chris J Earll, Mark Helmer, Patrick O Fallon, Timothy R. Schulze, Tobias Rivas-Ubach, Albert Bilbao, A. Richter, Henning Nothias, Louis-Félix Wang, Mingxun Orešič, Matej Weng, Jing-Ke Böcker, Sebastian Jeibmann, Astrid Hayen, Heiko Karst, Uwe Dorrestein, Pieter C. Petras, Daniel Du, Xiuxia Pluskal, Tomáš |
| spellingShingle |
Schmid, Robin Heuckeroth, Steffen Korf, Ansgar Smirnov, Aleksandr Myers, Owen Dyrlund, Thomas S. Bushuiev, Roman Murray, Kevin J Hoffmann, Nils Lu, Miaoshan Sarvepalli, Abinesh Zhang, Zheng Fleischauer, Markus Dührkop, Kai Wesner, Mark Hoogstra, Shawn J. Rudt, Edward Mokshyna, Olena Brungs, Corinna Ponomarov, Kirill Mutabdžija, Lana Damiani, Tito Pudney, Chris J Earll, Mark Helmer, Patrick O Fallon, Timothy R. Schulze, Tobias Rivas-Ubach, Albert Bilbao, A. Richter, Henning Nothias, Louis-Félix Wang, Mingxun Orešič, Matej Weng, Jing-Ke Böcker, Sebastian Jeibmann, Astrid Hayen, Heiko Karst, Uwe Dorrestein, Pieter C. Petras, Daniel Du, Xiuxia Pluskal, Tomáš Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| author_sort |
Schmid, Robin |
| title |
Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| title_short |
Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| title_full |
Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| title_fullStr |
Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| title_full_unstemmed |
Integrative analysis of multimodal mass spectrometry data in MZmine 3 |
| title_sort |
integrative analysis of multimodal mass spectrometry data in mzmine 3 |
| publisher |
Nature Publishing Group |
| publishDate |
2023-03-01 |
| url |
http://hdl.handle.net/10261/329968 https://api.elsevier.com/content/abstract/scopus_id/85149022457 |
| work_keys_str_mv |
AT schmidrobin integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT heuckerothsteffen integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT korfansgar integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT smirnovaleksandr integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT myersowen integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT dyrlundthomass integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT bushuievroman integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT murraykevinj integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT hoffmannnils integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT lumiaoshan integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT sarvepalliabinesh integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT zhangzheng integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT fleischauermarkus integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT duhrkopkai integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT wesnermark integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT hoogstrashawnj integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT rudtedward integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT mokshynaolena integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT brungscorinna integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT ponomarovkirill integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT mutabdzijalana integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT damianitito integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT pudneychrisj integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT earllmark integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT helmerpatricko integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT fallontimothyr integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT schulzetobias integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT rivasubachalbert integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT bilbaoa integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT richterhenning integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT nothiaslouisfelix integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT wangmingxun integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT oresicmatej integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT wengjingke integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT bockersebastian integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT jeibmannastrid integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT hayenheiko integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT karstuwe integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT dorresteinpieterc integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT petrasdaniel integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT duxiuxia integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 AT pluskaltomas integrativeanalysisofmultimodalmassspectrometrydatainmzmine3 |
| _version_ |
1770191976677769216 |
| spelling |
dig-inia-es-10261-3299682023-06-29T08:53:10Z Integrative analysis of multimodal mass spectrometry data in MZmine 3 Schmid, Robin Heuckeroth, Steffen Korf, Ansgar Smirnov, Aleksandr Myers, Owen Dyrlund, Thomas S. Bushuiev, Roman Murray, Kevin J Hoffmann, Nils Lu, Miaoshan Sarvepalli, Abinesh Zhang, Zheng Fleischauer, Markus Dührkop, Kai Wesner, Mark Hoogstra, Shawn J. Rudt, Edward Mokshyna, Olena Brungs, Corinna Ponomarov, Kirill Mutabdžija, Lana Damiani, Tito Pudney, Chris J Earll, Mark Helmer, Patrick O Fallon, Timothy R. Schulze, Tobias Rivas-Ubach, Albert Bilbao, A. Richter, Henning Nothias, Louis-Félix Wang, Mingxun Orešič, Matej Weng, Jing-Ke Böcker, Sebastian Jeibmann, Astrid Hayen, Heiko Karst, Uwe Dorrestein, Pieter C. Petras, Daniel Du, Xiuxia Pluskal, Tomáš Czech Science Foundation European Commission Department of Energy (US) National Science Foundation (US) National Institutes of Health (US) Department of Agriculture (US) Heuckeroth, Steffen [0000-0002-4928-2526] Dyrlund, Thomas S. [0000-0002-7159-6628] Bushuiev, Roman [0000-0003-1769-1509] Hoffmann, Nils [0000-0002-6540-6875] Fleischauer, Markus [0000-0001-7557-0831] Dührkop, Kai [0000-0002-9056-0540] Hoogstra, Shawn J. [0000-0003-2533-9310] Rudt, Edward [0000-0003-4351-3212] Fallon, Timothy R. [0000-0002-3048-7679] Schulze, Tobias [0000-0002-9744-8914] Bilbao, A. [0000-0003-2985-8249] Rivas-Ubach, Albert [0000-0003-1293-7127] Richter, Henning [0000-0003-3696-6993] Nothias, Louis-Félix [0000-0001-6711-6719] Orešič, Matej [0000-0002-2856-9165] Weng, Jing-Ke [0000-0003-3059-0075] Böcker, Sebastian [0000-0002-9304-8091] Hayen, Heiko [0000-0002-4074-8545] Karst, Uwe [0000-0002-1774-6787] Dorrestein, Pieter C. [0000-0002-3003-1030] Pluskal, Tomáš [0000-0002-6940-3006] 3 Pág. We thank Christopher Jensen and Gauthier Boaglio for their contributions to the MZmine codebase. We thank Jianbo Zhang and Zachary Russ for their donations to MZmine development. The MZmine 3 logo was designed by the Bioinformatics & Research Computing group at the Whitehead Institute for Biomedical Research. T.P. is supported by Czech Science Foundation (GA CR) grant 21-11563M and by the European Union’s Horizon 2020 research and innovation programme under Marie Skłodowska-Curie grant agreement 891397. Support for P.C.D. was from US NIH U19 AG063744, P50HD106463, 1U24DK133658 and BBSRC-NSF award 2152526. T.S. acknowledges funding by Deutsche Forschungsgemeinschaft (441958208). M. Wang acknowledges the US Department of Energy Joint Genome Institute ( https://ror.org/04xm1d337 , a DOE Office of Science User Facility) and is supported by the Office of Science of the US Department of Energy operated under subcontract No. 7601660. E.R. and H.H. thank Wen Jiang (HILICON AB) for providing the iHILIC Fusion(+) column for HILIC measurements. M.F., K.D. and S.B. are supported by Deutsche Forschungsgemeinschaft (BO 1910/20). L.-F.N. is supported by the Swiss National Science Foundation (project 189921). D.P. was supported through the Deutsche Forschungsgemeinschaft (German Research Foundation) through the CMFI Cluster of Excellence (EXC-2124 — 390838134 project-ID 1-03.006_0) and the Collaborative Research Center CellMap (TRR 261 - 398967434). J.-K.W. acknowledges the US National Science Foundation (MCB-1818132), the US Department of Agriculture, and the Chan Zuckerberg Initiative. MZmine developers have received support from the European COST Action CA19105 — Pan-European Network in Lipidomics and EpiLipidomics (EpiLipidNET). We acknowledge the support of the Google Summer of Code (GSoC) program, which has funded the development of several MZmine modules through student projects. We thank Adam Tenderholt for introducing MZmine to the GSoC program. Peer reviewed 2023-06-29T08:53:10Z 2023-06-29T08:53:10Z 2023-03-01 carta Nature Biotechnology 41(4): 447-449 (2023) 1087-0156 http://hdl.handle.net/10261/329968 10.1038/s41587-023-01690-2 1546-1696 36859716 2-s2.0-85149022457 https://api.elsevier.com/content/abstract/scopus_id/85149022457 en #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/891397 Instituto de Ciencias Forestales (ICIFOR) Publisher's version https://doi.org/10.1038/s41587-023-01690-2 Sí open application/pdf Nature Publishing Group |