Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome

The aetiology of every human disease lies in a combination of genetic and environmental factors, each contributing in varying proportions. While genomics investigates the former, a comparable holistic paradigm was proposed for environmental exposures in 2005, marking the onset of exposome research. Since then, the exposome definition has broadened to include a wide array of physical, chemical, and psychosocial factors that interact with the human body and potentially alter the epigenome, the transcriptome, the proteome, and the metabolome. The chemical exposome, deeply intertwined with the metabolome, includes all small molecules originating from diet as well as pharmaceuticals, personal care and consumer products, or pollutants in air and water. The set of techniques to interrogate these exposures, primarily mass spectrometry and nuclear magnetic resonance spectroscopy, are also extensively used in metabolomics. Recent advances in untargeted metabolomics using high resolution mass spectrometry have paved the way for the development of methods able to provide in depth characterisation of both the internal chemical exposome and the endogenous metabolome simultaneously. Herein we review the available tools, databases, and workflows currently available for such work, and discuss how these can bridge the gap between the study of the metabolome and the exposome.

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Main Authors: Balcells, Cristina, Xu, Yitao, Gil-Solsona, Rubén, Maitre, Léa, Gago-Ferrero, Pablo, Keun, Hector C.
Other Authors: European Commission
Format: artículo biblioteca
Language:English
Published: Elsevier 2023-12-11
Subjects:Metabolomics, Chemical exposome, Exposomics, HRMS, Mass spectrometry, http://metadata.un.org/sdg/3, Ensure healthy lives and promote well-being for all at all ages,
Online Access:http://hdl.handle.net/10261/341127
http://dx.doi.org/10.13039/501100000780
https://api.elsevier.com/content/abstract/scopus_id/85179607572
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spelling dig-idaea-es-10261-3411272024-05-17T20:40:37Z Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome Balcells, Cristina Xu, Yitao Gil-Solsona, Rubén Maitre, Léa Gago-Ferrero, Pablo Keun, Hector C. European Commission 0000-0002-7927-5538 Metabolomics Chemical exposome Exposomics HRMS Mass spectrometry http://metadata.un.org/sdg/3 Ensure healthy lives and promote well-being for all at all ages The aetiology of every human disease lies in a combination of genetic and environmental factors, each contributing in varying proportions. While genomics investigates the former, a comparable holistic paradigm was proposed for environmental exposures in 2005, marking the onset of exposome research. Since then, the exposome definition has broadened to include a wide array of physical, chemical, and psychosocial factors that interact with the human body and potentially alter the epigenome, the transcriptome, the proteome, and the metabolome. The chemical exposome, deeply intertwined with the metabolome, includes all small molecules originating from diet as well as pharmaceuticals, personal care and consumer products, or pollutants in air and water. The set of techniques to interrogate these exposures, primarily mass spectrometry and nuclear magnetic resonance spectroscopy, are also extensively used in metabolomics. Recent advances in untargeted metabolomics using high resolution mass spectrometry have paved the way for the development of methods able to provide in depth characterisation of both the internal chemical exposome and the endogenous metabolome simultaneously. Herein we review the available tools, databases, and workflows currently available for such work, and discuss how these can bridge the gap between the study of the metabolome and the exposome. CB, LM and HCK received funding from European Union's Horizon 2020 research and innovation programme under grant agreement no. 874583 [ATHLETE]. YX is supported by the President's PhD Scholarship from Imperial College London. Peer reviewed 2023-12-21T10:03:55Z 2023-12-21T10:03:55Z 2023-12-11 artículo http://purl.org/coar/resource_type/c_6501 Current Opinion in Chemical Biology 78: 102407 (2024) 13675931 http://hdl.handle.net/10261/341127 10.1016/j.cbpa.2023.102407 http://dx.doi.org/10.13039/501100000780 38086287 2-s2.0-85179607572 https://api.elsevier.com/content/abstract/scopus_id/85179607572 en #PLACEHOLDER_PARENT_METADATA_VALUE# info:eu-repo/grantAgreement/EC/H2020/874583 Current opinion in chemical biology Publisher's version https://doi.org/10.1016/j.cbpa.2023.102407 Sí open Elsevier
institution IDAEA ES
collection DSpace
country España
countrycode ES
component Bibliográfico
access En linea
databasecode dig-idaea-es
tag biblioteca
region Europa del Sur
libraryname Biblioteca del IDAEA España
language English
topic Metabolomics
Chemical exposome
Exposomics
HRMS
Mass spectrometry
http://metadata.un.org/sdg/3
Ensure healthy lives and promote well-being for all at all ages
Metabolomics
Chemical exposome
Exposomics
HRMS
Mass spectrometry
http://metadata.un.org/sdg/3
Ensure healthy lives and promote well-being for all at all ages
spellingShingle Metabolomics
Chemical exposome
Exposomics
HRMS
Mass spectrometry
http://metadata.un.org/sdg/3
Ensure healthy lives and promote well-being for all at all ages
Metabolomics
Chemical exposome
Exposomics
HRMS
Mass spectrometry
http://metadata.un.org/sdg/3
Ensure healthy lives and promote well-being for all at all ages
Balcells, Cristina
Xu, Yitao
Gil-Solsona, Rubén
Maitre, Léa
Gago-Ferrero, Pablo
Keun, Hector C.
Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
description The aetiology of every human disease lies in a combination of genetic and environmental factors, each contributing in varying proportions. While genomics investigates the former, a comparable holistic paradigm was proposed for environmental exposures in 2005, marking the onset of exposome research. Since then, the exposome definition has broadened to include a wide array of physical, chemical, and psychosocial factors that interact with the human body and potentially alter the epigenome, the transcriptome, the proteome, and the metabolome. The chemical exposome, deeply intertwined with the metabolome, includes all small molecules originating from diet as well as pharmaceuticals, personal care and consumer products, or pollutants in air and water. The set of techniques to interrogate these exposures, primarily mass spectrometry and nuclear magnetic resonance spectroscopy, are also extensively used in metabolomics. Recent advances in untargeted metabolomics using high resolution mass spectrometry have paved the way for the development of methods able to provide in depth characterisation of both the internal chemical exposome and the endogenous metabolome simultaneously. Herein we review the available tools, databases, and workflows currently available for such work, and discuss how these can bridge the gap between the study of the metabolome and the exposome.
author2 European Commission
author_facet European Commission
Balcells, Cristina
Xu, Yitao
Gil-Solsona, Rubén
Maitre, Léa
Gago-Ferrero, Pablo
Keun, Hector C.
format artículo
topic_facet Metabolomics
Chemical exposome
Exposomics
HRMS
Mass spectrometry
http://metadata.un.org/sdg/3
Ensure healthy lives and promote well-being for all at all ages
author Balcells, Cristina
Xu, Yitao
Gil-Solsona, Rubén
Maitre, Léa
Gago-Ferrero, Pablo
Keun, Hector C.
author_sort Balcells, Cristina
title Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
title_short Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
title_full Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
title_fullStr Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
title_full_unstemmed Blurred lines: Crossing the boundaries between the chemical exposome and the metabolome
title_sort blurred lines: crossing the boundaries between the chemical exposome and the metabolome
publisher Elsevier
publishDate 2023-12-11
url http://hdl.handle.net/10261/341127
http://dx.doi.org/10.13039/501100000780
https://api.elsevier.com/content/abstract/scopus_id/85179607572
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