Inter-comparison of marine microbiome sampling protocols
17 pages, 10 figures, supplementary data https://doi.org/10.1038/s43705-023-00278-w.-- Data Availability: All raw sequences from the EMOSE dataset, which includes all data used in this article, are available in the European Nucleotide Archive under the accession number ERP090011. The abundance tables are available at MGnify platform under accession number MGYS00001935. Note that both Versions 5 and 4.1 include all sequencing strategies (MetaB16SV4V5, MetaB18SV9 and metagenomes). The metadata for each sample database was recorded in PANGEA [71], but a cleaner version is available at Supplementary Table S2. The R scripts for all data manipulation, statistical tests and figures is available in github (https://github.com/pascoalf/Inter-comparison-of-marine-microbiome-sampling-protocols), no manipulation of data was done outside the scripts provided, except for manual curation of taxonomy, because it needs human experts’ evaluation
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Other Authors: | |
Format: | artículo biblioteca |
Language: | English |
Published: |
International Society for Microbial Ecology
2023-12
|
Subjects: | Conserve and sustainably use the oceans, seas and marine resources for sustainable development, |
Online Access: | http://hdl.handle.net/10261/354925 |
Tags: |
Add Tag
No Tags, Be the first to tag this record!
|
Summary: | 17 pages, 10 figures, supplementary data https://doi.org/10.1038/s43705-023-00278-w.-- Data Availability: All raw sequences from the EMOSE dataset, which includes all data used in this article, are available in the European Nucleotide Archive under the accession number ERP090011. The abundance tables are available at MGnify platform under accession number MGYS00001935. Note that both Versions 5 and 4.1 include all sequencing strategies (MetaB16SV4V5, MetaB18SV9 and metagenomes). The metadata for each sample database was recorded in PANGEA [71], but a cleaner version is available at Supplementary Table S2. The R scripts for all data manipulation, statistical tests and figures is available in github (https://github.com/pascoalf/Inter-comparison-of-marine-microbiome-sampling-protocols), no manipulation of data was done outside the scripts provided, except for manual curation of taxonomy, because it needs human experts’ evaluation |
---|